Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq25838 167 2e-36 seq18816 159 4e-34 seq33104 122 9e-23 >seq25838 Length=137 Score = 167 bits (184), Expect = 2e-36 Identities = 120/137 (88%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 8357 CCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCA 8416 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 137 CCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCA 78 Query 8417 AGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCC 8476 || |||||||||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 77 TGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCGCCACCACGCC 18 Query 8477 AAGCTAA-TTTTTGTAT 8492 ||||| ||||||||| Sbjct 17 CGGCTAATTTTTTGTAT 1 >seq18816 Length=115 Score = 159 bits (176), Expect = 4e-34 Identities = 103/113 (91%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 8423 TCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTA 8482 |||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||| Sbjct 1 TCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTA 60 Query 8483 ATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCT 8535 |||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 61 ATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAGGCTGGTCT 113 >seq33104 Length=109 Score = 122 bits (134), Expect = 9e-23 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||||| Sbjct 25 CTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCC 84 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTC 8433 |||||||||| ||||||||||||| Sbjct 85 TGGGTTCAAGCGATTCTCCTGCCTC 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521225632868600