Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 147 2e-30 seq6 141 9e-29 seq9 131 2e-25 seq3 116 3e-21 seq5 114 1e-20 seq8 111 1e-19 seq1 111 1e-19 seq10 109 5e-19 >seq4 Length=18984343 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | || || || ||||| ||||||||| ||||| ||||||| Sbjct 357464 CGCCACCGCGGAGGCGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 357523 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||| | | |||| ||||||||||| |||||||| ||||| ||||| ||||||| | Sbjct 357524 CGAGGGTCCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGCG 357583 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || ||||||| | || | || || | ||| | | | |||||| ||||| Sbjct 357584 GGATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCG 357642 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || ||||||||||| || || || ||||| |||||||| || Sbjct 357643 ACCTCGAGGGTGATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 357695 >seq6 Length=26286742 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || |||||| ||||||||| ||||| ||||||| Sbjct 15797867 GCCACCACGGAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 15797808 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || ||||||||||| || ||||| || || ||||| ||||||| || Sbjct 15797807 TAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 15797748 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| ||| || |||| ||| | | | ||||||| ||||| Sbjct 15797747 GATGCCTTCCTTGTCTTGGATCTTGGCCTTC-ACGTTGTCAATAGTGTCGGAGCTCTCCA 15797689 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| ||||| || || |||| ||||| ||||||||||||||| Sbjct 15797688 CCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCATG 15797639 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||||||||| ||||| ||||| | | || || | || || Sbjct 15796936 ACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCA 15796877 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| ||||| ||||| || || ||||| ||||| | || | || |||||||| | Sbjct 15796876 AGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGG 15796817 Query 41774 ATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||||| || | || ||||||| ||||||||| | ||| ||||| || Sbjct 15796816 ATCTTGGCCTTCA-CGTTGTCAATAGTGTCGGAGCTCTCCACCTCAAGCGTGATCGTCTT 15796758 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| ||||| ||||||||||||||| Sbjct 15796757 GCCGGTCAATGTCTTAACGAAAATCTGCATG 15796727 Score = 105 bits (116), Expect = 6e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| || |||| || || || ||| ||||||||||| ||||| | Sbjct 15797410 CCTCCACGTAGACGCAAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCT 15797351 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || | |||||||||||| ||||||| | ||| ||||||| || Sbjct 15797350 AGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAATATCAACCTCTGCTGGTCCGGTGGG 15797291 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||| ||| ||| | || || | || | | |||||| ||| ||| Sbjct 15797290 ATTCCCTCCTTATCC-TGAATCTTGGCCTTGACATTATCAATAGTGTCAGAGCT---CTC 15797235 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| || ||||| || ||||||| ||||| || ||||| |||||| Sbjct 15797234 CACCTCCAAAGTAATCGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCATG 15797183 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||||||||| ||||| ||||| | || || | | || || Sbjct 15797164 ACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCC 15797105 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||||| || | | |||||| ||| || Sbjct 15797104 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCC-TG 15797046 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | | || || | || | | |||||| ||| ||||||||||| || ||||| Sbjct 15797045 AATCTTGGCCTTGACATTATCAATAGTGTCAGAGCT---CTCCACCTCCAAAGTAATCGT 15796989 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||||| ||||| || ||||| |||||| Sbjct 15796988 CTTCCCCGTCAAAGTCTTGACAAAAATTTGCATG 15796955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||||| || || ||| ||| ||||| ||||| ||||||| Sbjct 18962238 GCCACCACGGAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGC 18962179 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || ||||||||||| ||||| || || ||||| ||||| | || Sbjct 18962178 TAAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGG 18962119 Query 41755 AACGCTCTCCTTGTC 41769 | || |||||||| Sbjct 18962118 GATGCCTTCCTTGTC 18962104 >seq9 Length=37155481 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||||||||||| ||| || || ||||||||||||||| ||||| | Sbjct 16984243 GCCACCACGCAGACGTAACACCAAATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGC 16984302 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||| || | || ||||||||||||||||| || |||| | ||| ||||| | || Sbjct 16984303 CAAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 16984362 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| || | || || | |||| | | | |||||| ||||| Sbjct 16984363 AATGCCTTCCTTGTCC-TGGATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCCA 16984421 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || ||||| || || ||||| || || |||||||| Sbjct 16984422 CCTCTAGAGTAATGGTCTTACCGGTAAGAGTCTTGACAAAGATCTGCAT 16984470 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| || |||| || || || ||||||||||||||||||||| | Sbjct 16960473 CCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGCC 16960532 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || ||||||||||||||||| || |||| ||||| ||||||| ||| Sbjct 16960533 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGA 16960592 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||| | || |||| |||| ||| | | | |||||| |||||| Sbjct 16960593 ATGCCTTCTTTGT-CTTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCAC 16960651 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| || || |||||||| Sbjct 16960652 CTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 16960699 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| ||||| || || || ||| ||||| ||||| ||||| | Sbjct 16960245 CCACCACGGAGACGTAGCACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCT 16960304 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||||||||| || |||| ||||| ||||||| ||| Sbjct 16960305 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGA 16960364 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||| | || |||| |||| ||| | | | |||||| |||||| Sbjct 16960365 ATGCCTTCTTTGT-CTTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCAC 16960423 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| || || |||||||| Sbjct 16960424 CTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 16960471 Score = 120 bits (132), Expect = 3e-22 Identities = 170/234 (73%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||||| || || || ||||||||||||||| ||||||| Sbjct 16984015 GCCACCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGC 16984074 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 |||||||| | || || ||||||||||| ||||| || || ||||| ||||| | || Sbjct 16984075 AAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGG 16984134 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CAGTGTCGCTCGA---C 41809 || | || |||||||| |||||| ||| |||| | || || | ||| | Sbjct 16984135 GATCCCT-TCCTTGTCTTGGATTTTGGCCTT----GACGTTATCAATGGTGTCCGAGCTC 16984189 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| | || || || || || || || ||||| || || ||||||||| Sbjct 16984190 TCCACCTCAAGTGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATG 16984243 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| || |||| || || || ||||||||||||||||||||| | Sbjct 16960701 CCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGCC 16960760 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || ||||||||||||||||| || |||| | ||| || |||| ||| Sbjct 16960761 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCCGGAGGA 16960820 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || || | ||| | | | ||| || |||||| Sbjct 16960821 ATACCCTCCTTGTCC-TGGATCTTAGCCTTGACGTTGTCAATAGTATCTGAACTCTCCAC 16960879 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || | ||||| ||||| || ||||| Sbjct 16960880 CTCCAAAGTAATAGTCTTTCCGGTTAATGTCTTAACGAAGATTTGCAT 16960927 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || ||||||||| || || || || | | Sbjct 16984472 CCTCCACGCAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATATTGTAATCAGCG 16984531 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | |||| ||||||||||| || || || |||| ||||| ||||| | ||| Sbjct 16984532 AGGGTTCTGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGA 16984591 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || | || |||| |||| | | | |||||| |||||| Sbjct 16984592 ATACCCTCCTTGT-CTTGGATCTTAGCTTTAACGTTGTCGATGGTGTCGGAGCTCTCCAC 16984650 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || || || ||||| || || |||||||| Sbjct 16984651 CTCGAGCGTGATCGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT 16984698 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || | | || ||||||| || |||||| |||||||| ||||| | | Sbjct 16960929 CCGCCACGGAGCCTGAGGACGAGATGCAAAGTTGACTCCTTTTGAATGTTGTAGTCAGCG 16960988 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| | || || |||||||| ||||| || |||| | || || ||| ||| Sbjct 16960989 AGGGTACGCCCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTTTGCTGATCCTGAGGA 16961048 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | || || ||| ||| | || |||| |||| | | | || || |||| || Sbjct 16961049 ATACCTTCTTTATCC-TGAATCTTGGCTTTAACGTTGTCGATGGTATCAGAGCTC---TC 16961104 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 16961105 CACCTCCAAAGTGATCGTCTTCCCTGTCAGTGTCTTAACGAAGATCTGCAT 16961155 >seq3 Length=31725688 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| ||||| | Sbjct 13311654 CCTCCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCC 13311595 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || ||||||||||| || ||||| || || ||||| ||||||| || Sbjct 13311594 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 13311535 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || |||| ||| | | | |||||| |||||| Sbjct 13311534 ATGCCTTCCTTGTCTTGGATCTTGGCCTTC-ACGTTGTCAATGGTGTCGGAGCTCTCCAC 13311476 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| |||||||||||||| Sbjct 13311475 CTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCAT 13311428 Score = 100 bits (110), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| || || || || ||||| ||||||||||| | | || || | || || Sbjct 13311409 CACCAGGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCCAAAGTACGACCATCCTC 13311350 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||| ||||| ||||| ||||| | ||| ||||| | |||| | ||| |||||| | Sbjct 13311349 AAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCC-T 13311291 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | |||| |||| ||| | | | |||||| ||||||||| | ||| ||||| | Sbjct 13311290 GGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATCGTCT 13311231 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || | ||||| ||||| ||||||||| Sbjct 13311230 TTCCTGTTAAAGTCTTCACGAAGATCTGCATG 13311199 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || ||||| ||||||||| ||||| ||||| | | ||| | | |||| || Sbjct 13310952 ACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTCCCGTCTTCC 13310893 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||||||||||||||| || || | ||| || |||| || | | |||||| ||| || Sbjct 13310892 AACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTATCC-TG 13310834 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | |||| | | | |||||| ||||||||| | || || || || Sbjct 13310833 AATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTT 13310774 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| |||||||| Sbjct 13310773 TCCGGTGAGAGTTTTCACGAAGATCTGCAT 13310744 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| || |||| || || || ||| ||||||||||| || || | Sbjct 13311199 GCCTCCACGTAGACGCAAGACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGC 13311140 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || | |||||| ||||| || |||| | ||| ||||||| || Sbjct 13311139 CAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 13311080 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | |||||| ||| || | || || | ||| | | | |||||| ||| || Sbjct 13311079 GATTCCCTCCTTATCC-TGGATCTTGGCCTTAACATTGTCAATAGTGTCAGAGCT---CT 13311024 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| || || || || || |||| ||||| || || |||||||| Sbjct 13311023 CAACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 13310972 >seq5 Length=23960834 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||||||||| ||||| || || ||||||||||||||| ||||||| Sbjct 16975303 GCCTCCACGCAGACGTAACACGAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGC 16975244 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || || | |||||||||||| || |||| ||||| ||||| | || Sbjct 16975243 CAATGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGG 16975184 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| || | || || | ||| | | |||||| ||||| Sbjct 16975183 GATTCCCTCCTTGTCC-TGTATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCCA 16975125 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || ||||| | ||||| || || ||||||||| Sbjct 16975124 CCTCGAGTGTGATCGTCTTTCCCGTTAAGGTCTTGACAAAGATCTGCATG 16975075 Score = 104 bits (114), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||||||||| |||| || |||| ||||| | | | || ||| Sbjct 16974828 ACGAGATGTAGAGTCGACTCCTTCTGGGTGTTGTAATCGGCTAGGGTTCTCCCCTCCTCG 16974769 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| ||||||| || || | ||| || |||| |||| | |||||||| | || Sbjct 16974768 AGCTGCTTTCCGGCGAGGATGAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGT-CTTG 16974710 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | | || |||| ||| | | | ||||| ||| |||||||| | || ||||| Sbjct 16974709 AATCTTGGCTTTAACATTGTCGATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATCGT 16974653 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| ||||| |||||||| Sbjct 16974652 CTTTCCCGTGAGTGTCTTAACGAAGATCTGCAT 16974620 Score = 104 bits (114), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||||||||| ||||| || |||| ||||| | | |||| ||| Sbjct 16975056 ACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCTCCCGTCCTCG 16974997 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| |||||||| || || | ||| || |||| |||| || |||||||| | || Sbjct 16974996 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGT-CTTG 16974938 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | | || |||| ||| | | | ||||| ||| |||||||| | || ||||| Sbjct 16974937 AATCTTGGCTTTAACATTGTCGATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATCGT 16974881 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| | ||||| | || || ||||| Sbjct 16974880 CTTTCCCGTTAAGGTCTTGAAAAAGATATGCAT 16974848 >seq8 Length=21613650 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || || ||||||||| ||||| ||||| | Sbjct 12585246 CCTCCACGCAGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 12585187 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || || | |||| || ||||||||||||||||| |||| | ||| |||||| | ||| Sbjct 12585186 AGAGTTCTACCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 12585127 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || ||||||| | || | || |||| ||| | | | |||||| ||| | Sbjct 12585126 ATCCCT-TCCTTGT-CTTGGATCTTGGCTTTCACGTTGTCGATTGTGTCGGAACTCTCGA 12585069 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| || || |||| ||||| ||||| |||||||| Sbjct 12585068 CCTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 12585020 Score = 102 bits (112), Expect = 8e-17 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| ||||||| || || || |||||| |||||||| ||||||| Sbjct 12585475 GCCACCGCGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGC 12585416 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||| || ||||| || || ||||| ||||| | || Sbjct 12585415 AAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGG 12585356 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CAGTGTCGCTCGA---CT 41810 | | |||||||| ||| || ||| |||| | || || | ||| || Sbjct 12585355 GATGTCTTCCTTGTCTTGGATCTTGGCCTT----GACGTTATCAATGGTGTCCGAGCTCT 12585300 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || || || || || || | |||| || || |||||||| Sbjct 12585299 CCACCTCCAGTGTGATGGTCTTTCCGGTTAAGTTCTTGACAAAGATCTGCAT 12585248 >seq1 Length=28635137 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| || |||| || ||||| ||||||||||||||| || || | Sbjct 22221419 GCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCAGC 22221478 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||| | | || || | ||||| || ||||| || || | ||| ||||| | || Sbjct 22221479 CAAGGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCGGGAGG 22221538 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| || |||| |||| ||| | | | |||||| ||||| Sbjct 22221539 AATACCCTCCTTGTCC-TGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCA 22221597 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| ||||| || || |||| ||||| ||||| || |||||| Sbjct 22221598 CCTCTAGCGTGATCGTCTTTCCTGTCAAAGTCTTGACGAAGATTTGCATG 22221647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||||||||| ||||| ||||||| || || | | || || Sbjct 22221894 ACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTTCTTCCATCCTCC 22221953 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||||||||| || || || | ||| ||||||| || | | |||||| ||| || Sbjct 22221954 AACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCC-TG 22222012 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || || | |||| | | | || ||| || ||||||| || ||||| || Sbjct 22222013 GATCTTGGCCTTAACGTTGTCGATGGTATCGGAGCTTTCAACCTCCAAAGTGATCGTCTT 22222072 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || || || |||||||| Sbjct 22222073 TCCGGTCAGAGTTTTAACAAAGATCTGCAT 22222102 >seq10 Length=17599535 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || |||||||||||| ||||| || | Sbjct 17168591 CCACCACGGAGACGCAACACAAGGTGAAGGGTAGACTCCTTCTGAATATTATAATCCGCA 17168532 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||| || || ||||| || || | ||| ||||| | || Sbjct 17168531 AGCGTACGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 17168472 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||||||| ||| | ||||||| ||| | | | ||||| ||| ||| Sbjct 17168471 ATGCCTTCCTTGTCC-TGAATCTTTGCTTTGACGTTGTCAATCGTGTCAGAGCT---CTC 17168416 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || |||||||| |||| ||||| || || |||||||| Sbjct 17168415 AACCTCCAAGGTAATTGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 17168365 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || ||||||||| ||||| || || | Sbjct 17168819 CCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 17168760 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || ||||| || || ||||| || || | ||||||||||| ||| Sbjct 17168759 AAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGA 17168700 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||||| ||| | || || | ||| | | | ||||| ||| ||| Sbjct 17168699 ATCCCTTCCTTGTCC-TGAATCTTAGCCTTCACGTTGTCTATCGTGTCTGAGCT---CTC 17168644 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| || || || |||| ||||| || || || ||||| Sbjct 17168643 AACTTCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 17168593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462071409078800