Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 168 1e-36 seq8835 107 4e-18 seq11 107 4e-18 seq7 105 1e-17 seq1 105 1e-17 seq1382 104 5e-17 seq523 104 5e-17 seq6 104 5e-17 seq931 100 6e-16 seq83 98.7 2e-15 seq24 98.7 2e-15 >seq2 Length=36921656 Score = 168 bits (186), Expect = 1e-36 Identities = 577/887 (65%), Gaps = 33/887 (4%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| |||||||||||| || ||| | || ||||| ||||||||||| || | || Sbjct 1442194 TCTGCATGTTCCCAATCCAGTACCCCCAAATCTGGGAAATGTACAAGAAAGCCGAAGCCT 1442253 Query 229811 CTTTCTGGACCACTGAGGAAGTT--CCTCTGAACGCAG-ACGTCGTCGACTGGCGTGAGA 229867 |||||||||| | ||||| || ||||| ||||| || || | ||||| || Sbjct 1442254 CTTTCTGGACGGCGGAGGAGGTCGACCTCT---CGCAGGACCTCCGCCACTGG---GACT 1442307 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 |||| |||| |||||| || ||| ||| ||| |||| | || || || | ||||| Sbjct 1442308 CCCTCACCGACGGCGAACGCCACTTCGTCACCCACGTCCTCGCCTTCTTTGCCGCCTCCG 1442367 Query 229928 ATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAG 229986 | || || || | || ||||| || | || ||| | ||| | || | ||| Sbjct 1442368 ACGGCATCGTCCTCGAGAATCTCGCCGGCCG-CTTCATGAAGGAGATCCAAGTCGCCGAG 1442426 Query 229987 GCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCT 230046 || || || || | | ||||| || ||| ||||| || || || Sbjct 1442427 GCTCGCGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACAGC 1442486 Query 230047 CTGCTTATCGACGCGCTTATT------TCCGACGAGCAAGAACGGAACGAGCTTTTTGAT 230100 || || |||| | || ||||||||| | | || | || || | Sbjct 1442487 CTCCTCCTCGAAACCTACATCAAGAGCTCCGACGAGAA------GCACCACCTCTTCCAC 1442540 Query 230101 GCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160 ||||| |||| |||||| ||| || ||||| | ||||| | | ||| | || Sbjct 1442541 GCCATCGAAACCATCCCCTGCGTTGCCAAGAAGGCCCAATGGGCCCTGCGCTGGATCGAC 1442600 Query 230161 CCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220 | | || || || ||||| ||||||||| | || || || || || | || Sbjct 1442601 TCCTCCGACTCCTTCGCTGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTC 1442660 Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 230280 || || || |||||| |||| || ||||| ||| || |||||||||||||| | Sbjct 1442661 TCTGGAAGCTTCTGCTCCATTTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGCCTCACT 1442720 Query 230281 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATG 230340 | || ||||| |||| ||||||||||| || || | |||| | || || Sbjct 1442721 TTCTCCAACGAACTCATTTCCCGCGACGAGGGGCTTCACTGCGACTTCGCCTGCCTCTTG 1442780 Query 230341 TATTCAAAGCTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAA 230397 || || ||| ||| ||||| || |||| | || || | ||| | | || Sbjct 1442781 TACTCTCTGCTGAGGAAGAAGCT--CAG-CGAGGAGCGCGTGAAGGAGATCGTGAGGGAC 1442837 Query 230398 GCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-AT 230456 || || || | ||| | |||||| | || ||||| |||| || ||| || ||| || Sbjct 1442838 GCTGTGGATATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTG-CGCGTTGCTGGGGAT 1442896 Query 230457 GAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT 230516 ||| | || | ||||| |||||||| || || || || || || | || ||||| || Sbjct 1442897 GAATGGGGAGTTGATGGGTCAGTACATTGAGTTTGTGGCGGATCGTTTGTTGGTTGCGCT 1442956 Query 230517 TGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCT 230576 ||| | || ||| |||||||| | ||||||| |||| | |||||||| |||||| | Sbjct 1442957 TGGCTGCGGGAAGGTGTACAATGTTCAGAACCCTTTTGACTGGATGGAGCTGATTTCGTT 1443016 Query 230577 TCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || ||||||||||| ||||| || ||||| || | || ||||||| Sbjct 1443017 GCAGGGGAAGACCAATTTCTTTGAGAAGCGCGTGGGGGAGTATCAGA 1443063 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 5747953 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 5748012 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 5748013 GCCCCACGGTGGGC 5748026 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 36133607 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 36133666 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 36133667 CCCCACGGTGGGC 36133679 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 11419476 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11419417 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11419416 CCCACGGTGGGC 11419405 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 11420956 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11420897 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11420896 CCCACGGTGGGC 11420885 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 34319876 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34319935 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 34319936 CCCACGGTGGGC 34319947 >seq8835 Length=1032 Score = 107 bits (118), Expect = 4e-18 Identities = 212/314 (68%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 60894 GGAGATTTAACTGATTCAGCTAGTTTGATTAATATAATTACCAAGATTCGTCCGGATGAA 60953 || |||||||| || ||| | | ||| | | ||| || | || | | || |||||| Sbjct 691 GGCGATTTAACAGACTCATCAAATTTAACTCGTATTATCAATGAGGTACAGCCAGATGAA 750 Query 60954 ATCTATAATATGGCTGCTCAAAGTTTTGTGGGAGATAGCTTTCACCAAGCTGAAGTGACT 61013 || |||||| ||||||| ||| | ||| | | || ||| | | ||| ||| Sbjct 751 ATTTATAATTTGGCTGCACAATCTCATGTTGCTGTCAGTTTTGAGTCTCCAGAATATACT 810 Query 61014 GCAAATGTAGACGCTCTTGGTGTTCTGCGTTTGTTAGACGCCGTTCGTATAGCAGGTTT- 61072 || |||| || ||| | || |||| || || || || ||||| | |||||| Sbjct 811 GCTGATGTCGATGCTTTAGGAACATTGCGATTATTGGAAGCAATTCGTTTTTTAGGTTTA 870 Query 61073 -----GAACTCTCGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAA 61127 ||| || | | | |||||||||||| |||||||| ||||| ||| ||||| Sbjct 871 GAGAAGAAAACTAAATTCTATCAAGCATCAACGTCTGAACTCTATGGTTTAGTGCAAGAG 930 Query 61128 ATTCCTCAAACAGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTA 61187 | |||||| | ||||| || || |||||||||||| || |||| ||| || ||||| Sbjct 931 ACTCCTCAGAAAGAAACAACGCCTTTTTATCCTCGTTCTCCTTATGCTGTGGCTAAACTC 990 Query 61188 TACGCTTACTGGAT 61201 || || || ||||| Sbjct 991 TATGCCTATTGGAT 1004 >seq11 Length=48970052 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 28667120 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 28667179 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 28667180 GCCCCACGGTGGGC 28667193 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3110820 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3110879 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3110880 CCCACGGTGGGC 3110891 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 2084223 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2084282 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2084283 CCCCACGGTGGGC 2084295 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 11596252 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11596311 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11596312 CCCACGGTGGGC 11596323 >seq7 Length=19579009 Score = 105 bits (116), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 ||||||| ||||||||||||||||||||||||||| || || |||| || ||||||| Sbjct 11179867 TTAAAACAAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 11179926 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 11179927 TGGGTTCGAGCCCCACGGTGGGC 11179949 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 13326772 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13326831 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13326832 CCCACGGTGGGC 13326843 >seq1 Length=17676265 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1127434 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1127375 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1127374 CCCCACGGTGGGC 1127362 >seq1382 Length=54839 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4594 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4653 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4654 CCCACGGTGGGC 4665 >seq523 Length=164983 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 109139 CTAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 109198 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 109199 AGCCCCACGGTGGGC 109213 >seq6 Length=23791330 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4391352 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4391411 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4391412 CCCACGGTGGGC 4391423 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 21760938 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21760879 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21760878 CCCACGGTGGGC 21760867 >seq931 Length=88782 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 57951 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 58010 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 58011 CCCCACGGTGGGC 58023 >seq83 Length=517288 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 315410 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 315351 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 315350 CCCACGGTGGGC 315339 >seq24 Length=939071 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| ||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 735047 GCCTGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 734988 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 734987 CCCACGGTGGGC 734976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057328814073680