Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq848 132 7e-26 seq11 129 9e-25 >seq848 Length=99386 Score = 132 bits (146), Expect = 7e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | ||||| ||||| || || || || || | ||| | || ||| Sbjct 56538 AATGCAAATATTTGTGAAGACCCTAACCGGAAAGACAATCACCCTTGAGGTGGAGAGC-T 56596 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || ||| || | || || ||||| || |||||||| || ||||| || | Sbjct 56597 CTGACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAAGAAGGCATCCCACCAGACC 56656 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||||| |||||||| || ||||| | |||||| | ||||| || | ||| |||| Sbjct 56657 AGCAAAGGCTCATTTTTGCTGGGAAACAGCTCGAGGATGGCCGAACTTTGGCAGACTATA 56716 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||||| || || ||| | || |||||| | ||| | || ||||| || Sbjct 56717 ACATTCAAAAGGAGTCCACTCTACACTTGGTTCTCCGTCTCCGTGGTGGCAT 56768 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | ||||| || || || || || || || | ||| | || ||| Sbjct 63612 ATGCAAATCTTCGTTAAGACTCTCACCGGTAAGACCATCACCCTTGAGGTGGAGAGCTC- 63670 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || |||||||| |||||||| || ||||| || || Sbjct 63671 TGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAAGAAGGCATCCCACCAGACCA 63730 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||||||||| || ||||| | |||||| | |||| ||| ||||| || Sbjct 63731 GCAAAGGCTTATTTTTGCTGGGAAACAGCTCGAGGATGGCAGAACCCTAGCTGATTACAA 63790 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | || |||||| | ||| | || ||||| || Sbjct 63791 CATCCAAAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGAAT 63841 Score = 107 bits (118), Expect = 3e-18 Identities = 168/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | || || || ||||| || | ||| ||||| Sbjct 57451 ATGCAGATATTTGTCAAGACTTTGACTGGAAAGACTATTACCTTGGAGGTTGAAAGTTCA 57510 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| ||||| ||||| || || || || ||||| || || Sbjct 57511 GACACGATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 57570 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || || |||||||||||| | | || | | ||||| || Sbjct 57571 CAGAGGTTGATCTTTGCTGGGAAGCAATTAGAGGATGGAAGGACTCTTGCTGATTACAAC 57630 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT-GGTATTAAAAATT 124776 ||||| ||||| || ||| | || | ||||| ||| | || ||| ||| |||||| || Sbjct 57631 ATTCAGAAAGAGTCTACTCTTCACCTTGTTTTGCGTCTTCGCGGTGGGTTTTAAAAGTT 57689 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | ||||| || || || || || || || | || |||| ||| Sbjct 63839 AATGCAAATATTTGTTAAGACTCTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 63898 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || || |||| | || || |||||||| ||||| ||||| ||||| || | Sbjct 63899 A-GACACCATAGATAATGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCACCAGACC 63957 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| ||||| |||||||| || ||||| | |||||| | || ||| | | ||| || | Sbjct 63958 AACAGAGGCTCATTTTTGCTGGGAAACAGCTTGAGGATGGACGCACACTTGCAGACTACA 64017 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| || || || || | || | || | ||||| | ||||| || Sbjct 64018 ACATTCAGAAGGAGTCCACCCTTCACCTTGTCCTTCGTTTGAGGGGTGGCAT 64069 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| || || || ||| | ||| | || ||| | Sbjct 57223 ATGCAGATTTTTGTGAAGACTCTTACAGGGAAGACAATTACTTTGGAGGTAGAGAGCTCA 57282 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| |||| ||| || || || || || ||||| || || || || Sbjct 57283 -GACACAATTGACAATGTAAAGGCGAAGATACAGGACAAGGAGGGTATTCCTCCAGACCA 57341 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||||||||| || | || ||| | || ||| | | ||| || || Sbjct 57342 GCAAAGGTTGATTTTTGCAGGAAAGCAGCTTGAAGATGGACGTACACTGGCAGACTACAA 57401 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||| || || || || Sbjct 57402 TATTCAGAAGGAGTCCAC 57419 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| | || || || ||||| || | ||| ||||| Sbjct 56995 ATGCAGATCTTTGTAAAGACTTTGACTGGAAAGACTATTACCCTGGAGGTTGAAAGTTCA 57054 Query 124599 GATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || ||| |||||||| || || || || || ||||| || || Sbjct 57055 GACACCATCGATAATGTGAAGACA-AAAATTCAGGACAAGGAGGGGATCCCACCAGACCA 57113 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | |||||||| || || ||||| |||||| | | || | | || || || Sbjct 57114 GCAGAGGTTGATTTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAA 57173 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||||||||| | || | || || || | || |||||||| Sbjct 57174 CATTCAGAAAGAATCAACACTCCACCTTGTCTTGCGACTCCGTGGTGGTAT 57224 >seq11 Length=48970052 Score = 129 bits (142), Expect = 9e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || || ||||| || || || || | ||| | ||| | Sbjct 43337419 ATGCAAATATTTGTGAAAACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 43337478 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| || || ||||| || || || || || ||||| ||||| Sbjct 43337479 GATACTATTGACAATGTTAAAGCA-AAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 43337537 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||||||||| || || ||||| || ||| |||| || || | || ||||| Sbjct 43337538 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCGGACTATAA 43337597 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||| || ||||| ||||| ||| | || | || | || ||||| Sbjct 43337598 TATTCAGAAGGAATCCACTTTACATCTTGTGCTTCGCCTTCGTGGTGG 43337645 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || || || || ||| | ||| ||||| | Sbjct 43329630 ATGCAAATATTTGTGAAGACTCTGACGGGAAAGACCATTACTTTGGAGGTTGAAAGTTCT 43329689 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | || || ||||| ||||| |||||||| ||||| ||||| Sbjct 43329690 GACACTATAGATAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAG 43329749 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| || || || | || ||| | || || | | || || ||| Sbjct 43329750 CAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCTGACTACAAT 43329809 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| | |||||||| || || | || |||||||| Sbjct 43329810 ATCCAGAAGGAATCCACTCTACATTTGGTGTTGCGGCTTCGTGGTGGTAT 43329859 Score = 116 bits (128), Expect = 6e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || ||||||| || || || || | ||| | ||| | Sbjct 43329858 ATGCAAATATTTGTGAAAACTTTAACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 43329917 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| | | | || || ||||| || || ||||| || || || || || Sbjct 43329918 GATACTATTGACAGTGTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCGGACCAG 43329977 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||||||||| || || ||||| || ||| |||| || || | ||||| ||| Sbjct 43329978 CAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCTGATTACAAT 43330037 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| ||||| || || || ||| | ||| | ||| | || ||||| Sbjct 43330038 ATTCAGAAAGAGTCCACCTTACATCTTGTTCTTCGTCTTCGTGGTGG 43330084 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || || || |||||| | ||| ||||| Sbjct 43329402 ATGCAGATTTTTGTGAAGACTTTGACGGGAAAGACCATAACTTTGGAGGTTGAAAGTTCA 43329461 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| || ||||| || || || ||||| ||||| || || Sbjct 43329462 GATACCATTGATAACGTGAAAGCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 43329521 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| || |||||| | || ||| | |||| | | ||||| || Sbjct 43329522 CAGAGGCTTATCTTTGCTGGTAAACAACTCGAAGATGGAAGAACCCTTGCGGATTACAAC 43329581 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| ||||||||||||| | | || ||||| || Sbjct 43329582 ATCCAGAAAGAGTCCACTCTGCATTTGGTTTTGAGGCTTCGTGGTGGCAT 43329631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755110983244800