Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq8 111 2e-19 seq6 111 2e-19 seq11 109 6e-19 seq2 107 2e-18 seq706 104 3e-17 seq848 95.1 1e-14 seq537 93.3 5e-14 seq738 82.4 9e-11 >seq8 Length=20383548 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 13445054 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAA 13445113 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||| ||||||||||||| ||| | | |||||||||| ||| || |||| ||| Sbjct 13445114 TATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 13445172 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | || || ||||| |||||||| || || | Sbjct 13445173 TGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTTATCGTTTTACCCGTTAGGGTTTTCA 13445232 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 13445233 CGAAAATCTGCAT 13445245 >seq6 Length=23791330 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 10734047 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 10733988 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || |||||||||| ||| || |||| ||| Sbjct 10733987 GATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 10733929 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | || || ||||| |||||||| || || | Sbjct 10733928 TGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTTATCGTTTTACCCGTTAGGGTTTTCA 10733869 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 10733868 CGAAGATCTGCAT 10733856 >seq11 Length=48970052 Score = 109 bits (120), Expect = 6e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||| | ||||||||| | ||| |||||| ||||| |||||||| || Sbjct 43329172 CCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCG 43329113 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | |||| || |||||||| ||||| || || || | ||| || || | || Sbjct 43329112 AGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGG 43329053 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||| ||| ||| || ||| | | | | ||||| ||| |||| Sbjct 43329052 ATACCCTCCTTATCCTGGATCTTGGCTTTCACATTGTCTATGGTGTCTGAGCT---TTCC 43328996 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| || || || | || || |||||||| ||||| Sbjct 43328995 ACCTCGAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||| | ||||||||| | ||| |||||| ||||| |||||||| || Sbjct 43336733 CCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCG 43336674 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | |||| || |||||||| ||||| || || || | ||| || || | || Sbjct 43336673 AGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGG 43336614 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||| |||||| ||| || ||| | | | | ||||| ||| |||| Sbjct 43336613 ATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGAGCT---TTCC 43336557 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || || | || || |||||||| ||||| Sbjct 43336556 ACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||||||| | ||| ||||| || |||||||||||||| || || ||| | Sbjct 43337405 CGCAACACCAAATGTAGAGTGGATTCCTTCTGGATATTGTAATCAGCAAGGGTACGCCCA 43337346 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || || || | ||||||||| | || | || |||||| Sbjct 43337345 TCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTA 43337286 Query 43089 TCC 43091 ||| Sbjct 43337285 TCC 43337283 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||||||||| ||| |||||| || || |||||||| || || || ||| | Sbjct 43337177 CGCAACACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGCCCA 43337118 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || || || || | ||||||||| | ||| | | ||||||| Sbjct 43337117 TCCTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCCTTG 43337058 Query 43089 TCCATGATTTTTTGTTT 43105 | | ||| | || |||| Sbjct 43337057 T-CTTGAATCTTGGTTT 43337042 >seq2 Length=36921656 Score = 107 bits (118), Expect = 2e-18 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||| || || || |||| || |||||||| || ||||| Sbjct 32545474 TCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 32545533 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || |||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 32545534 ATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 32545592 Query 43113 GCCACCG-TGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | || | |||| ||| |||||| |||| |||||||| ||||| || || ||||| Sbjct 32545593 GTCAATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 32545649 Query 43169 TACAAAGATTTGCAT 43183 || ||||||||||| Sbjct 32545650 AACGAAGATTTGCAT 32545664 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || |||||| || || || || ||||| || || || | Sbjct 32545221 ACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTATAGTCAGCGAGGGTGCGGCC 32545280 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || | | ||||||||| | || | | ||||| Sbjct 32545281 GTCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTT 32545340 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || | || |||| ||| | | | |||||| ||| || |||| |||| Sbjct 32545341 GTCC-TGGATCTTAGTTTTCACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGA 32545399 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || ||||| || ||||| ||||| Sbjct 32545400 TTGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 32545436 >seq706 Length=122390 Score = 104 bits (114), Expect = 3e-17 Identities = 158/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| |||||||||||| ||||||||||||| || || | Sbjct 22802 ACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGGCC 22861 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| || ||||| || ||||| | ||| ||||| | || | || ||| || Sbjct 22862 ATCCTCAAGCTGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTT 22921 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| | || | || | | | | | | ||||| |||| ||||| || | | Sbjct 22922 GT-CTTGAATCTTGGCTTTAACATTGTCTATGGTGTCAGAGCTC---TCCACCTCAAGGG 22977 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | ||||| || || || || ||||| ||||| ||||||||| Sbjct 22978 TTATGGTCTTTCCTGTGAGAGTCTTAACAAAAATTTGCATT 23018 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| |||||||| || |||||||| || || || ||| | Sbjct 23030 ACGGAGCACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTTCGCCC 23089 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || ||||| ||||||||||| | || | | ||||| Sbjct 23090 ATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTT 23149 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCG 43143 || | ||| | || | || | | | | || ||| ||| ||||| |||| | Sbjct 23150 GT-CTTGAATCTTGGCCTTCACGTTATCTATGGTATCGGAACTC---TCCACTTCGAGAG 23205 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || || || || ||||| |||||||||||||| Sbjct 23206 TGATGGTCTTACCAGTCAGGGTCTTAACAAAGATTTGCAT 23245 >seq848 Length=99386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||||||||| || || || |||| ||| || | || || Sbjct 56747 ACCAAGTGTAGAGTGGACTCCTTTTGAATGTTATAGTCTGCCAAAGTTCGGCCATCCTCG 56688 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| || ||||| || ||||| | |||||||| | || | || || |||||| || Sbjct 56687 AGCTGTTTCCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCC-TG 56629 Query 43095 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 | | || | |||| ||| | | | ||||| |||| ||||| || | ||||| | Sbjct 56628 AATCTTAGCCTTGA-CGTTGTCAATGGTGTCAGAGCTC---TCCACCTCAAGGGTGATTG 56573 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || ||||| ||||| ||||| ||||||||| Sbjct 56572 TCTTTCCGGTTAGGGTCTTCACAAATATTTGCATT 56538 >seq537 Length=160394 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/141 (75%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 42952 ATTGT-CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| ||||| || | | |||||||||||| | ||| |||||||| || || ||| Sbjct 154730 ATTGTTCCTCCCCTGAGCCTCAACACCAAATGAAGTGTTGATTCCTTTTGTATGTTATAA 154789 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 ||||| ||||| || | || || ||||||||||||||||| || | | ||||||||| Sbjct 154790 TCAGCAAGAGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCA 154849 Query 43071 GCCGGCACGCTCTCCTTGTCC 43091 | || | | ||||||||| Sbjct 154850 GGAGGGATACCTTCCTTGTCC 154870 >seq738 Length=117988 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 60038 CAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCC 60097 ||| ||||||| || || ||||| | | || || ||| ||||||||| |||| ||| Sbjct 56621 CAAAAAATTAAAATTCATTAAAAACT--CGCCGTTGCCGGGGATCGAACCCGGGTCACCC 56678 Query 60098 GCGTGACAGGCGGACATACTCACCACTATACTAC 60131 ||||||||||||| ||||| ||||||||||||| Sbjct 56679 GCGTGACAGGCGGGAATACTTACCACTATACTAC 56712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571556450902080