Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6 116 2e-21 seq8 111 1e-19 seq11 105 4e-18 seq848 93.3 3e-14 seq706 93.3 3e-14 seq2 86.0 4e-12 >seq6 Length=23791330 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | ||| || ||||| ||||||||||||| Sbjct 10734082 CCGCCGCGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 10734023 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| ||||| ||||||||||| || Sbjct 10734022 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGA 10733963 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | || || || Sbjct 10733962 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 10733903 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 |||| || || ||||| || || || |||||||| ||||||||||||| Sbjct 10733902 TCCAAGGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCG 10733854 >seq8 Length=20383548 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 13445019 CCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 13445078 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||| || ||||| ||||| |||||||||||| || Sbjct 13445079 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAATATGAGGCGCTGCTGGTCGGGCGGA 13445138 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | || || || Sbjct 13445139 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 13445198 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 |||| || || ||||| || || || |||||||| || |||||||||| Sbjct 13445199 TCCAGGGTTATCGTTTTACCCGTTAGGGTTTTCACGAAAATCTGCATCG 13445247 >seq11 Length=48970052 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 |||| || || || | ||||| || |||||||| ||| ||||| || || ||||| | Sbjct 43337647 ATCCACCACGAAGGCGAAGCACAAGATGTAAAGTGGATTCCTTCTGAATATTATAGTCCG 43337588 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || ||| | || ||||| ||||| || || ||||| |||| |||||| || | Sbjct 43337587 CCAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTG 43337528 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCG 34339 | | || ||||||||| |||||| |||||| || | | || | ||| | ||| Sbjct 43337527 GAATGCCCTCCTTGTCCTGAATCTTT-GCTTTAACATTGTCAATAGTATCAGAGCTTTCC 43337469 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| || ||||| || || || |||||||||||||| || ||||| Sbjct 43337468 ACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTTTTCACAAATATTTGCAT 43337419 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || ||||| || |||||||| || ||||| || | || ||| | || Sbjct 43330069 AGAACAAGATGTAAGGTGGACTCTTTCTGAATATTGTAATCAGCCAAGGTACGACCATCT 43330010 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| ||||| || || ||||| |||| ||||||||| ||| | || |||||||| Sbjct 43330009 TCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 43329950 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | | | || | ||| | ||| || |||| || ||||| Sbjct 43329949 TGAATCTTTGCCTTCACACTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTC 43329890 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | |||||||||||| || ||||| Sbjct 43329889 TTCCCTGTTAAAGTTTTCACAAATATTTGCAT 43329858 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| |||| || | |||| || | ||||||||| || ||| Sbjct 43329136 TCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAA 43329077 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || |||| ||| || || || | | |||||| || ||||| ||||| | || Sbjct 43329076 ATCAGCCTCTGTTGATCCGGAGGGATACCCTCCTTATCCTGGATCTTG-GCTTTCACATT 43329018 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| | || | ||| || || | |||||||| || ||||| | ||||||||| Sbjct 43329017 GTCTATGGTGTCTGAGCTTTCCACCTCGAGGGTGATGGTCTTACCGGTCAAAGTTTTCAC 43328958 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 43328957 AAAGATCTGCATC 43328945 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| |||| || | |||| || | ||||||||| || ||| Sbjct 43336697 TCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAA 43336638 Query 34259 ATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 || |||| ||| || || || || || |||| ||||| ||||| ||||| | | Sbjct 43336637 ATCAGCCTCTGTTGATCCGGAGGGATACCCTCT--TTGTCCTGGATCTTG-GCTTTCACA 43336581 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | || | ||| || || | |||||||| || ||||| | ||||||| Sbjct 43336580 TTGTCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTC 43336521 Query 34376 ACAAAGATCTGCATC 34390 ||||||||||||||| Sbjct 43336520 ACAAAGATCTGCATC 43336506 >seq848 Length=99386 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||| ||| | || || || || |||||||| |||| Sbjct 56538 TCCACCACGGAGACGGAGCACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGGC 56479 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| | || || | ||||||||| || || ||||| || ||||||||| || Sbjct 56478 GAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGTGG 56419 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||| | || | |||| | ||| | || || Sbjct 56418 GATGCCTTCCTTGTCTTGAATTTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCTAC 56359 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||||| |||||||| || || || ||||| |||||| Sbjct 56358 TTCGAGAGTGATGGTTTTACCGGTGAGGGTCTTAACGAAGATTTGCATC 56310 >seq706 Length=122390 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | ||||||| ||| | ||| ||| || || |||||||| |||| Sbjct 23018 TCCACCGCGGAGACGGAGCACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCGGC 23077 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || || | || || | ||||||||| || |||||||| ||||||||||| | || Sbjct 23078 AAGGGTTCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCTGGTGG 23137 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || |||||||| ||||| ||| | | |||| | ||||| || | Sbjct 23138 GATCCCT-TCCTTGTCTTGAATCTTGGCCTTCACGTTATCTATGGTATCGGAACTCTCCA 23196 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || | |||||||| || || || || || || |||||||| |||||| Sbjct 23197 CTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTAACAAAGATTTGCATC 23246 >seq2 Length=36921656 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| || ||||| ||||| ||||| | Sbjct 32545210 CCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTATAGTCAGCG 32545269 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || | || ||||||||| ||| Sbjct 32545270 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 32545329 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| || | | | | || | |||| |||||| Sbjct 32545330 ATTCCTTCCTTGTCCTGGATCTTAGTTTTCACGTTGTCGATGGTGTCGGAGCTTTCGACC 32545389 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 32545390 TCGAGGGTGATTGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 32545436 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| | || || |||| || | |||||| || ||||| Sbjct 32545473 TTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 32545532 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || |||||||| ||| | | |||||||| ||||| ||| | | Sbjct 32545533 GATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 32545592 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | ||| || || | |||||||| ||||||||||| || || || Sbjct 32545593 GTCAATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 32545652 Query 34378 AAAGATCTGCATC 34390 ||||| |||||| Sbjct 32545653 GAAGATTTGCATC 32545665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322928141692160