Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3 111 3e-19 seq5 98.7 2e-15 >seq3 Length=29476785 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 248785 GACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTG 248844 ||| ||| ||| ||| | || || || || || |||| |||| |||||||| || Sbjct 2833499 GACAGCGAGATAATCTATGACAGGGACTTTGACTATGATTATTTTGGGTTCAAAACCCTT 2833440 Query 248845 GAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTG 248904 |||| ||||| ||| | || || |||| ||| | |||||| | ||||||||||||| Sbjct 2833439 GAGAGGTCGTACCTCTTGAAGGTTAATGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTG 2833380 Query 248905 ATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACC 248964 ||| | || ||||| || |||||||||||||||||||| || || | || ||| | Sbjct 2833379 ATGAGGGTCGCTGTTGGAATTCACAAGGATGACATAGATTCTGTTGTCAAAACTTACCAC 2833320 Query 248965 GGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||| || | ||| | || ||||| | || || || ||||| ||||| || Sbjct 2833319 ATGATGTCCCAAAGATGGTTCACCCATGCATCTCCAACTCTTTTCAATGCCGGAAC 2833264 >seq5 Length=5133333 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| ||||||||| |||||| || ||| | | || || Sbjct 4458644 GACTTTGACTATGATTACTTTGGTTTCAAAACCTTGGAGAGGTCCTATTTGTTGAAGGTT 4458585 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | |||||| | |||||||||||||||| | || ||||| || |||||| Sbjct 4458584 CAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCAC 4458525 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 4458524 AAGGATGACATTGA 4458511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073263751157248