Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq11 89.7 4e-13 >seq11 Length=48970052 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || ||||| ||||| ||||| || |||| || || |||||||||||| || || Sbjct 43330054 GTGGACTCTTTCTGAATATTGTAATCAGCCAAGGTACGACCATCTTCCAATTGCTTCCCA 43329995 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | ||||| || || || ||| ||| | ||||||||| || ||| | | ||| Sbjct 43329994 GCAAAAATAAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTC 43329935 Query 18249 AC-CTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || |||| ||| ||| ||| | || || | ||| ||| | || || || || || Sbjct 43329934 ACACTGT-CAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCTGTTAAAGT 43329876 Query 18308 TTTTACAAAAATTTGCAT 18325 ||| ||||| |||||||| Sbjct 43329875 TTTCACAAATATTTGCAT 43329858 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 18097 ATCCTCCCCGTAGTCTAAGTACCA--TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 |||| || || || | ||| || | ||| ||||| ||||| || ||||| || ||||| Sbjct 43337647 ATCCACCACGAAGGCGAAGCACAAGATGTAAAGTG--GATTCCTTCTGAATATTATAGTC 43337590 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 |||| || || |||||||||||| || || ||| | ||||| || || ||||| Sbjct 43337589 CGCCAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 43337530 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCT 18273 || | ||| ||||| || ||| | |||||| | | || ||| ||| ||| | | Sbjct 43337529 TGGAATGCCCTCCTTGTCCTGAATCT-TTGCTTTAACATTGTCAATAGTATCAGAGCTTT 43337471 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || | ||| ||| | || || |||| ||||| ||||| |||||||| Sbjct 43337470 CCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTTTTCACAAATATTTGCAT 43337419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379175084755320