Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 105 8e-18 seq5 100 4e-16 seq3 84.2 3e-11 >seq2 Length=36921656 Score = 105 bits (116), Expect = 8e-18 Identities = 239/354 (68%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || |||||||| | ||| | |||||| || || ||||| Sbjct 1442773 CAGGCGAAGTCGCAGTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGG 1442714 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | ||| ||||| || ||||| || ||||| ||| ||| || |||||| Sbjct 1442713 CCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATGGAGCAGAAGCTTCCAGAGAAGAAG 1442654 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33760 ||||| || || ||| || ||||| | | | ||| | | | || | | || Sbjct 1442653 ATTCCCTCGAC-GCAGGCGAAGGCGACGATGCGCTCAGCGAAGGAGTCGGAGGAGTCGAT 1442595 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| | ||||| | ||||||||| || || || || ||||| ||||| | || Sbjct 1442594 CCAGCGCAGGGCCCATTGGGCCTTCTTGGCAACGCAGGGGATGGTTTCGATGGCGTGGAA 1442535 Query 33821 GAGATAGtttttttCATTACTATCT-TTAACATAAGTATCGATCAAAAGACTATACATTT 33879 ||| | || || || | | || || | || || |||| | || || ||||| | Sbjct 1442534 GAGGTGGTGCTTCTC-GTCGGAGCTCTTGATGTAGGTTTCGAGGAGGAGGCTGTACATCT 1442476 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 | || || ||||| || ||||| || || || |||||||| | |||||||| Sbjct 1442475 CGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGG 1442422 >seq5 Length=5133333 Score = 100 bits (110), Expect = 4e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || || || || || || |||||| | | ||| | | || Sbjct 4458433 GTTCCTGCATTGAAAATAGTGGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 4458492 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | | ||| || || || || | ||| |||||||| || || || | ||| || Sbjct 4458493 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 4458551 Query 63782 CATGTGCTGAGGTCTTTCAACAA--TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 |||||||||||| ||||| |||| ||| ||| | |||||||| ||||| | ||| Sbjct 4458552 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTG--AACCTTCAACAAATAGGACCTCTCC 4458609 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || ||||| |||||||| || | || |||||| | |||||||| || Sbjct 4458610 AAGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 4458659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||| || ||||| | || | ||| || | ||| | || | || |||||| | |||||| Sbjct 4457650 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGGACAATACC 4457709 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 |||||| | ||||| || || || || | ||| |||||||||| | | ||| || Sbjct 4457710 ATTTGATGTCCCATTTGTGCCACGAATGTAACTGCCAGTGGCACGAATGTCATGAATAGA 4457769 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| ||||| ||| ||||| || || || || |||||||| || Sbjct 4457770 AACACCAATTCCTCCTGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATAT 4457829 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || ||||||||||||| ||||| || || || || ||| Sbjct 4457830 TCCCTCTATGCTATCATTTTTCATGCAGAGAAGGAAGCAACTA 4457872 >seq3 Length=29476785 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || ||||| || || || |||||| ||| || | | | | Sbjct 2833264 GTTCCGGCATTGAAAAGAGTTGGAGATGCATGGGTGAACCATCTTTGGGACATCATGTGG 2833323 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | | | | || ||||| || | ||| |||||||| || ||||| | ||| || Sbjct 2833324 TAAGTTTTGACAACAGAATCTATGTCATCCTTG-TGAATTCCAACAGCGACCCTCATCAA 2833382 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| ||||| |||| || || | ||||| | ||| || | || | Sbjct 2833383 CATGTGCTGAGGCCTTTCCACAACCTTTCCATTAACCTTCAAGAGGTACGACCTCTCAAG 2833442 Query 63842 AGTTTTAAAACCAAAATA 63859 ||||| || |||||||| Sbjct 2833443 GGTTTTGAACCCAAAATA 2833460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629529962302080