Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq848 120 3e-22 seq11 95.1 1e-14 seq706 93.3 4e-14 seq6 82.4 8e-11 seq2 82.4 8e-11 >seq848 Length=99386 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || || || | ||| | ||| ||||||| || ||||| ||||| ||||| ||||| ||| Sbjct 63838 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCT 63779 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || || ||||||||||| |||||| | || || | |||||| || || || Sbjct 63778 -AGGGTTCTGCCATCCTCGAGCTGTTTCCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGG 63720 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | ||| | | || | ||||| | | ||||| Sbjct 63719 GATGCCTTCTTTGTC-TTGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCA 63661 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||| ||||| | || || ||||| |||||||| Sbjct 63660 CCTCAAGGGTGATGGTCTTACCGGTGAGAGTCTTAACGAAGATTTGCAT 63612 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| ||||| | || ||||| |||||||||||||| || Sbjct 56766 GCCACCACGGAGACGGAGAACCAAGTGTAGAGTGGACTCCTTTTGAATGTTATAGTCTGC 56707 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | || ||||||||||| |||||| | || || | |||||| || || || Sbjct 56706 CAAAGTTCGGCCATCCTCGAGCTGTTTCCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGG 56647 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | || | | || | ||||| | | ||||| Sbjct 56646 GATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCA 56588 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||| ||||| | || || || ||||||||||| Sbjct 56587 CCTCAAGGGTGATTGTCTTTCCGGTTAGGGTCTTCACAAATATTTGCAT 56539 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | ||| ||||| ||||| ||||| |||||| Sbjct 56537 CCACCACGGAGACGGAGCACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGGCG 56478 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| || |||||| |||| ||||||||||| ||||| || Sbjct 56477 AGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGTGGG 56418 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| |||| | ||| | | || | || || | ||| || Sbjct 56417 ATGCCTTCCTTGTC-TTGAATTTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCTAC 56359 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || ||||| | || || ||||| |||||||| Sbjct 56358 TTCGAGAGTGATGGTTTTACCGGTGAGGGTCTTAACGAAGATTTGCAT 56311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| | ||||| ||||||||||| |||||||| ||||| Sbjct 57677 CCACCGCGAAGACGCAAAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCA 57618 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || | || || |||||| |||||| | ||||| || || || Sbjct 57617 AGAGTCCTTCCATCCTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 57558 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| |||||| ||| | | || | ||||| | || ||| Sbjct 57557 ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTATCAATCGTGTCTGAACTTTCAACC 57498 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | ||||| || ||||| || || || ||||| |||||| || Sbjct 57497 TCCAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACAAATATCTGCATACCT 57447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCT 139619 ||||| |||||||| || ||||| || || || || ||| | || | |||||||||| Sbjct 56970 GTGAAGGGTAGACTCCTTCTGAATATTGTAGTCTGCCAGTGTCCGTCCA-TCTTCGAGCT 56912 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 |||| |||||| | |||| | ||| || || || || || || || ||||| ||| | Sbjct 56911 GTTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCT 56852 Query 139680 TTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | |||| | || | ||||| | | ||| ||||||| ||| | ||||| |||| Sbjct 56851 TAGCCTTTACATTGTCTATAGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTTCCGG 56792 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | || || || || || ||||| Sbjct 56791 TGAGGGTCTTAACAAAAATCTGCAT 56767 >seq11 Length=48970052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||| | || ||||| || || ||||||||||| Sbjct 43336962 GCCACCACGAAGCCGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTATAATCCGC 43336903 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| |||||||| |||||| |||| || | ||||| || || || Sbjct 43336902 AAGGGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGG 43336843 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | ||||| | || | || || | ||||| Sbjct 43336842 GATACCCTCCTTGTC-CTGAATCTTGGCTTTTACATTATCAATGGTATCTGAACTCTCCA 43336784 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | || || || ||||| ||||| ||||| |||||||| Sbjct 43336783 CCTCCAAGGTGATAGTTTTTCCCGTCAAAGTTTTGACGAAAATTTGCAT 43336735 >seq706 Length=122390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| ||||||||||| ||||| | Sbjct 22791 CCACCGCGAAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 22850 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || |||||||| |||||| | || || | || || || || || Sbjct 22851 AAGGTTCGGCCATCCTCAAGCTGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGG 22910 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| | || | |||| | | || | ||||| | | |||||| Sbjct 22911 ATGCCCTCTTTGTC-TTGAATCTTGGCTTTAACATTGTCTATGGTGTCAGAGCTCTCCAC 22969 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| || || | || || || || |||||||| Sbjct 22970 CTCAAGGGTTATGGTCTTTCCTGTGAGAGTCTTAACAAAAATTTGCAT 23017 >seq6 Length=23791330 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 23717763 GCCACCACGGAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 23717822 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | | || |||||||| || || || |||||||||||||||| || || || Sbjct 23717823 GAGGGTCCGCCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGTTGCTGGTCTGGTGG 23717882 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | || | || | | || | ||||| | ||||| Sbjct 23717883 GATCCCTTCCTTGTC-CTGAATCTTGGCCTTCACATTGTCGATGGTGTCCGAACTCTCCA 23717941 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| ||||||| || || ||||| |||||||| Sbjct 23717942 CCTCCAGAGTTATGGTCTTACCGGTCAGAGTCTTAACGAAGATTTGCAT 23717990 >seq2 Length=36921656 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || || || || || ||||| || || Sbjct 32545437 GCCACCACGGAGACGGAGGACGAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGC 32545496 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| |||||||| || || || |||| ||||||||||| || || || Sbjct 32545497 GAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGGGG 32545556 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||| | | ||||| Sbjct 32545557 AATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCCAC 32545616 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | || || ||||| |||||||| Sbjct 32545617 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 32545664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495837447571200