Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 seq5 100 4e-16 seq3 95.1 2e-14 >seq2 Length=36921656 Score = 120 bits (132), Expect = 4e-22 Identities = 242/354 (68%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||| | ||| ||||||||||| || ||||| Sbjct 1442773 CAGGCGAAGTCGCAGTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGG 1442714 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 || ||||| | ||| ||||| || ||||| || ||||| ||| | | ||||| ||||| Sbjct 1442713 CCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATGGA-GCAGAAGCTTCCAGAGAAGAA 1442655 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 |||||| || || ||| ||||| || | | ||| | | | || | | || Sbjct 1442654 GATTCCCTCGACGCAGGCGAAGGCGACGATGCGCTCAGCGAAGGAGTCGGAGGAGTCGAT 1442595 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| | ||||| | ||||||||| || || || || ||||| ||||| | || Sbjct 1442594 CCAGCGCAGGGCCCATTGGGCCTTCTTGGCAACGCAGGGGATGGTTTCGATGGCGTGGAA 1442535 Query 50199 GAGATAGtttttttCATTACTATCT-TTAACATAAGTATCGATCAAAAGACTATACATTT 50257 ||| | || || || | | || || | || || |||| | || || ||||| | Sbjct 1442534 GAGGTGGTGCTTCTC-GTCGGAGCTCTTGATGTAGGTTTCGAGGAGGAGGCTGTACATCT 1442476 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 | || || ||||| || ||||| || || || |||||||| | |||||||| Sbjct 1442475 CGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGG 1442422 >seq5 Length=5133333 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | ||| || | ||| | || | || |||||| | |||||| Sbjct 4457650 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGGACAATACC 4457709 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || || ||| |||||||||| | | ||| || Sbjct 4457710 ATTTGATGTCCCATTTGTGCCACGAATGTAACTGCCAGTGGCACGAATGTCATGAATAGA 4457769 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| ||||| ||| ||||| || || || || || ||||| || Sbjct 4457770 AACACCAATTCCTCCTGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATAT 4457829 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 |||||||||||||||| ||||| || || || || ||| Sbjct 4457830 TCCCTCTATGCTATCATTTTTCATGCAGAGAAGGAAGCAACTA 4457872 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | || || || || || || |||||| | | ||||| | || Sbjct 4458433 GTTCCTGCATTGAAAATAGTGGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 4458492 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | | ||| || || || || | ||| |||||||| || || || | ||| || Sbjct 4458493 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 4458551 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| ||||| || | ||| | | |||||||| || || | ||||| Sbjct 4458552 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAACAAATAGGACCTCTCCAA 4458611 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| |||||||| || | || |||||| | |||||||| || Sbjct 4458612 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 4458659 >seq3 Length=29476785 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | ||| | || | ||||||||||| || ||| Sbjct 2832867 TCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGCAACATTGGAACAACACC 2832926 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| || ||||| || || ||||| |||||| ||||||| || || || || Sbjct 2832927 ATTGGAAGTCCCATTTGTACCACGAATATAACTTCCAGTGGCACGTATGTTGTGAACAGA 2832986 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 2832987 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATAT 2833046 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 |||||||| |||||||| ||||| Sbjct 2833047 CCCCTCTATACTATCATCTTTCATG 2833071 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | || ||||| || || || |||||| ||| |||| | | | Sbjct 2833264 GTTCCGGCATTGAAAAGAGTTGGAGATGCATGGGTGAACCATCTTTGGGACATCATGTGG 2833323 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | | | | || ||||| || | ||| |||||||| || ||||| | ||| || Sbjct 2833324 TAAGTTTTGACAACAGAATCTATGTCATCCTTG-TGAATTCCAACAGCGACCCTCATCAA 2833382 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| ||||| || | ||| ||| | ||||| | ||| || | || | Sbjct 2833383 CATGTGCTGAGGCCTTTCCACAACCTTTCCATTAACCTTCAAGAGGTACGACCTCTCAAG 2833442 Query 80514 AGTTTTAAAACCAAAATA 80531 ||||| || |||||||| Sbjct 2833443 GGTTTTGAACCCAAAATA 2833460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717940766639040