Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 5e-12 seq848 82.4 6e-11 seq706 82.4 6e-11 >seq11 Length=48970052 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 || ||||||||||| ||| |||||| || | |||||||||| | || | |||| Sbjct 43336719 TAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTC 43336660 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || | || ||||| |||||||||| | ||||||||| | || | ||| ||||| || Sbjct 43336659 CTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGGATACCCTCTTTGTC 43336600 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAG 43075 |||| |||| || || | | ||||| ||| || || || | || || | Sbjct 43336599 CTGGATCTTGGCTTTCACATTGTCGATGGTGTC-TGAGCTTTCCACCTCAAGGGTGATGG 43336541 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || ||||| | |||||||||||| || ||||| Sbjct 43336540 TCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 || ||||||||||| ||| |||||| || | |||||||||| | || | |||| Sbjct 43329158 TAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTC 43329099 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 || | || ||||| |||||||||| | ||||||||| | || | ||| || || || Sbjct 43329098 CTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGGATACCCTCCTTATC 43329039 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAG 43075 |||| |||| || || | | ||||| ||| || || || | || || | Sbjct 43329038 CTGGATCTTGGCTTTCACATTGTCTATGGTGTC-TGAGCTTTCCACCTCGAGGGTGATGG 43328980 Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || ||||| | |||||||||||| || ||||| Sbjct 43328979 TCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 >seq848 Length=99386 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| || | |||| ||||||||| | || || || | Sbjct 56766 GCCACCACGGAGACGGAGAACCAAGTGTAGAGTGGACTCCTTTTGAATGTTATAGTCTGC 56707 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || || | ||||| || |||||||| | | || || || | || Sbjct 56706 CAAAGTTCGGCCATCCTCGAGCTGTTTCCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGG 56647 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | |||||||| || |||| || | ||||| || ||| ||||| ||| ||| Sbjct 56646 GATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAG-AGCTCTCC 56589 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | || || || ||||||||||| || |||||||| ||||||||| Sbjct 56588 ACCTCAAGGGTGATTGTCTTTCCGGTTAGGGTCTTCACAAATATTTGCATT 56538 >seq706 Length=122390 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | ||| ||||||||| | |||||||| | ||| || || | || || Sbjct 22808 CACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGGCCATCCTC 22867 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | ||||| || |||||||| | | |||||| || | || | || ||||| || Sbjct 22868 AAGCTGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTG 22927 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 ||| |||| || || | | ||||| ||| ||| || || | ||||| || | Sbjct 22928 AATCTTGGCTTTAACATTGTCTATGGTGTCAG-AGCTCTCCACCTCAAGGGTTATGGTCT 22986 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||| || ||||||||||||||| Sbjct 22987 TTCCTGTGAGAGTCTTAACAAAAATTTGCATT 23018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381199782791088