Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 100 4e-16 seq2 95.1 2e-14 >seq3 Length=29476785 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | ||| | || | ||||||||||| || ||| Sbjct 2832867 TCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGCAACATTGGAACAACACC 2832926 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||| | ||||| || || ||||| |||||| ||||||| || ||| || || Sbjct 2832927 ATTGGAAGTCCCATTTGTACCACGAATATAACTTCCAGTGGCACGTATGTTGTGAACAGA 2832986 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 2832987 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATAT 2833046 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||||||||||||||||| ||||| Sbjct 2833047 CCCCTCTATACTATCATCTTTCATG 2833071 >seq2 Length=36921656 Score = 95.1 bits (104), Expect = 2e-14 Identities = 228/340 (67%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || ||||| || | ||| | ||||||||| || ||||| Sbjct 1442773 CAGGCGAAGTCGCAGTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGG 1442714 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| | ||| ||||| || ||||| || || || ||| | | | ||||| ||||| Sbjct 1442713 CCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATGGA-GCAGAAGCTTCCAGAGAAGAA 1442655 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 |||||| || || || ||||| | | | ||| | | | | | | || Sbjct 1442654 GATTCCCTCGACGCAGGCGAAGGCGACGATGCGCTCAGCGAAGGAGTCGGAGGAGTCGAT 1442595 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| | ||||| | ||||||||| || || || || ||||| ||||| | || Sbjct 1442594 CCAGCGCAGGGCCCATTGGGCCTTCTTGGCAACGCAGGGGATGGTTTCGATGGCGTGGAA 1442535 Query 42304 GAGATAGtttttttCATTACTATCT-TTAACATATGTATCGATCAAAAGACTATACATTT 42362 ||| | || || || | | || || | || || |||| | || || ||||| | Sbjct 1442534 GAGGTGGTGCTTCTC-GTCGGAGCTCTTGATGTAGGTTTCGAGGAGGAGGCTGTACATCT 1442476 Query 42363 CTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 | || || ||||| || ||||| || || || |||||||| Sbjct 1442475 CGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAA 1442436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670832690727360