Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq11 100 3e-16 seq848 89.7 5e-13 >seq11 Length=48970052 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| |||||| | || ||||| | || || || || || |||||||||||| Sbjct 43336734 GCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGC 43336675 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || ||| ||| ||||| || || |||||| | ||||| | || ||||| ||||| Sbjct 43336674 GAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGG 43336615 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| || || ||| | | || | ||||| | | ||| || Sbjct 43336614 GATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGAGCTTTCCAC 43336555 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| |||||||| ||||| || || || ||||| Sbjct 43336554 CTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| |||||| | || ||||| | || || || || || |||||||||||| Sbjct 43329173 GCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGC 43329114 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || ||| ||| ||||| || || |||||| | ||||| | || ||||| ||||| Sbjct 43329113 GAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGG 43329054 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || || || ||| | | || | ||||| | | ||| || Sbjct 43329053 GATACCCTCCTTATCCTGGATCTTGGCTTTCACATTGTCTATGGTGTCTGAGCTTTCCAC 43328994 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| |||||||| ||||| || || || ||||| Sbjct 43328993 CTCGAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| ||||| | || || ||||| || ||||||||||| | || || || Sbjct 43329614 CAAAACCAAATGCAGAGTGGACTCTTTCTGGATGTTGTAATCCGCAAGGGTTCTTCCATC 43329555 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||||||||||||||||||| |||| || | ||||| || || || || || || ||||| Sbjct 43329554 TTCGAGTTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 43329495 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| || ||| | | || | || || | ||| || || | ||| | || Sbjct 43329494 CTGAATCTTGGCTTTCACGTTATCAATGGTATCTGAACTTTCAACCTCCAAAGTTATGGT 43329435 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || ||||| || || || || || ||||| Sbjct 43329434 CTTTCCCGTCAAAGTCTTCACAAAAATCTGCAT 43329402 >seq848 Length=99386 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || || || | ||| | ||| || |||| || || || ||||| ||||||||||| ||| Sbjct 63838 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCT 63779 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || || ||||| ||||| |||||| | || || | |||||| || || || Sbjct 63778 -AGGGTTCTGCCATCCTCGAGCTGTTTCCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGG 63720 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||| || || | | || | ||||| | | || || Sbjct 63719 GATGCCTTCTTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCAC 63660 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| ||||| | || || ||||| |||||||| Sbjct 63659 CTCAAGGGTGATGGTCTTACCGGTGAGAGTCTTAACGAAGATTTGCAT 63612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506782846523520