Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq11 113 4e-20 seq706 111 1e-19 seq848 89.7 4e-13 seq2 86.0 5e-12 >seq11 Length=48970052 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||||| || |||||||| || || || |||||||| | ||| | | || Sbjct 43336946 AACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTATAATCCGCAAGGGTTCTTCCATCT 43336887 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || ||| | |||||||||||||| || || | ||||| ||||| Sbjct 43336886 TCAAGCTGTTTTCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 43336827 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || |||||| | | | ||||| | |||| || | ||| || ||| Sbjct 43336826 TGAATCTTGGCTTTTACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTGATAGTT 43336767 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||||||||| ||||||||||| Sbjct 43336766 TTTCCCGTCAAAGTTTTGACGAAAATTTGCAT 43336735 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || || ||||| || |||||||||||||| |||| || | || |||| || Sbjct 43330060 TGTAAGGTGGACTCTTTCTGAATATTGTAATCAGCCAAGGTACGACCATCTTCCAATTGC 43330001 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| ||||||| |||||||| ||| ||| | ||| || ||||| ||| || Sbjct 43330000 TTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGAATCTTT 43329941 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGTTTTACCT 19015 || || | | | ||||| ||| || ||| || | ||||||||| || ||| Sbjct 43329940 GCCTTCACACTGTCAATAGTAT---CAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCT 43329884 Query 19016 GTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||||||||| ||||| |||||||| Sbjct 43329883 GTTAAAGTTTTCACAAATATTTGCAT 43329858 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| || | || ||||| || | || |||||||| ||||| |||||||| || Sbjct 43336733 CCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCG 43336674 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||||| ||||| || || ||| |||| || ||||| |||||| || Sbjct 43336673 AGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGG 43336614 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| || || ||| || | | ||| || || ||| Sbjct 43336613 ATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGAGCTTTCCACC 43336554 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| ||||| || |||||||| ||||| || ||||| Sbjct 43336553 TCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || || || ||||| |||||||| || ||||||| || | || |||| || Sbjct 43337621 TGTAAAGTGGATTCCTTCTGAATATTATAGTCCGCCAAGGTACGACCATCTTCCAATTGC 43337562 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| ||||||| ||||||||||| || | |||||| ||||| ||| || Sbjct 43337561 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTT 43337502 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGTTTTACCT 19015 ||| || | | | | ||||| ||| || ||| || | ||||||||| || ||| Sbjct 43337501 GCTTTAACATTGTCAATAGTAT---CAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCT 43337445 Query 19016 GTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| ||||| |||||||| Sbjct 43337444 GTCAGAGTTTTCACAAATATTTGCAT 43337419 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || |||||||| || || ||||||||||| | ||| | | || Sbjct 43329385 AAAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTTCTTCCATCT 43329326 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 ||||||||||| || ||| | ||||| |||||||| || || | ||||| ||||| Sbjct 43329325 TCCAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 43329266 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | | ||||| | || || | ||| || || Sbjct 43329265 TGAATCTTGGCTTTCACATTATCAATCGTATCTGAACTTTCAACCTCCAAGGTGATAGTC 43329206 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||||||||| ||||||||||| Sbjct 43329205 TTTCCCGTCAAAGTTTTGACGAAAATTTGCAT 43329174 >seq706 Length=122390 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||||||||| |||||||| |||| ||| | | ||||| Sbjct 22808 CACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGGCCATCCTC 22867 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || ||| |||| || ||||| || || || | |||||||||||| Sbjct 22868 AAGCTGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCTTG 22927 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | | || || |||| || | ||| ||||| || Sbjct 22928 AATCTTGGCTTTAACATTGTCTATGGTGTCAGAGCTCTCCACCTCAAGGGTTATGGTCTT 22987 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| | ||| || ||||||||||||||| Sbjct 22988 TCCTGTGAGAGTCTTAACAAAAATTTGCATT 23018 >seq848 Length=99386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||||||||| || |||||||| || | ||| || | ||||| Sbjct 63820 ACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCTAGGGTTCTGCCATCCTCG 63761 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| ||||||| || ||||| || || | ||| |||||||| | Sbjct 63760 AGCTGTTTCCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCTTGA 63701 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | | || || |||| || | ||| ||||| ||| Sbjct 63700 ATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTA 63641 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || || || |||||||| Sbjct 63640 CCGGTGAGAGTCTTAACGAAGATTTGCAT 63612 >seq2 Length=36921656 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| ||||||||||| || || | || | | ||||||||||| || || Sbjct 32544556 GTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTCCTCCCATCCTCCAGCTGCTTCCCT 32544615 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||| ||| || | ||| || ||||| |||||| || Sbjct 32544616 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTCGCCTTC 32544675 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | | || || | || |||| || | ||||||||| ||||| || | ||| Sbjct 32544676 ACATTGTCAATGGTGTC-CGAGCTCTCCACCTCCAAGGTAATGGTCTTACCCGTGAGAGT 32544734 Query 19024 TTTGACAAAAATTTGCATT 19042 ||| || ||||| |||||| Sbjct 32544735 TTTAACGAAAATCTGCATT 32544753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414388197987184