Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq11 102 6e-17 seq848 93.3 3e-14 seq706 89.7 4e-13 >seq11 Length=48970052 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||||| ||| |||||| |||||||| ||||| || ||| |||| |||||||| Sbjct 43330061 ATGTAAGGTGGACTCTTTCTGAATATTGTAATCAGCCAAGGTACGACCATCTTCCAATTG 43330002 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 || || ||||| || | || ||||||||| | || | ||||| || || ||| || Sbjct 43330001 CTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGAATCTT 43329942 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 | || || | ||| |||||| | ||||| || | ||||| || || || || Sbjct 43329941 TGCCTTCACACTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCTGT 43329882 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 |||||| ||||||||||||||||| Sbjct 43329881 TAAAGTTTTCACAAATATTTGCAT 43329858 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||||||||| ||| || || || ||||| || || | |||| |||| Sbjct 43329841 AACACCAAATGTAGAGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTACGCCCATCT 43329782 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| || || || ||||| || | || ||||| ||| | || | |||||| ||||| Sbjct 43329781 TCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGAATACCTTCCTTATCC 43329722 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || || || || | | ||| || | || || || | ||||| || Sbjct 43329721 TGAATCTTAGCCTTCACATTATCTATAGTGTCAGAACTTTCAACCTCCAAAGTAATGGTC 43329662 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || | |||||||||||||||||||||| Sbjct 43329661 TTTCCCGTCAGAGTCTTCACAAATATTTGCATG 43329629 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || ||| ||| || || || || ||||| | |||| |||| Sbjct 43337174 AACACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGCCCATCC 43337115 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | ||||| || ||||| || | || |||||||| | || | ||| || || ||| Sbjct 43337114 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCT 43337055 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||| || || ||| |||||||| || || || | || || || Sbjct 43337054 TGAATCTTGGTTTTCACATTATCAATAGTATCTGAACTTTCAACCTCCAAAGTTATGGTC 43336995 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || || ||||||||||| || |||||| Sbjct 43336994 TTTCCAGTCAAGGTCTTCACAAAAATCTGCATG 43336962 >seq848 Length=99386 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| ||||| ||| ||| |||||||| ||||| || || || |||| || Sbjct 56747 ACCAAGTGTAGAGTGGACTCCTTTTGAATGTTATAGTCTGCCAAAGTTCGGCCATCCTCG 56688 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||| || ||||| || | || ||||||||| | || | |||||||| || | Sbjct 56687 AGCTGTTTCCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCCTGA 56628 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| | ||| || || | |||||| || | || ||||| || Sbjct 56627 ATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATTGTCTTT 56568 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| |||||||||||||||||||| Sbjct 56567 CCGGTTAGGGTCTTCACAAATATTTGCAT 56539 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || |||||| ||| ||||| || || |||||| | ||| |||| || Sbjct 56520 CACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGGCGAGGGTACGGCCATCCTC 56461 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || ||||| || | ||||||||||| | || | ||||| || ||| Sbjct 56460 AAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTG 56401 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || | | | ||||||| ||| || |||| || || ||||| Sbjct 56400 AATTTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCTACTTCGAGAGTGATGGTTTT 56341 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| | ||||| || || |||||||| Sbjct 56340 ACCGGTGAGGGTCTTAACGAAGATTTGCAT 56311 >seq706 Length=122390 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| || || ||||| ||||||| |||||||| | || | || || | Sbjct 22405 CATCTTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCT 22464 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || |||||| ||||| || ||| ||||||| ||| || || | |||| Sbjct 22465 TGTCCTGAATTTTAGCCTTGACATTATCAATTGTATCTGAACTCTCAACCTCCAAGGTAA 22524 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || |||||||||||||| || ||||| Sbjct 22525 TTGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 22561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354619623743328