Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 seq537 91.5 1e-13 >seq11 Length=48970052 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||||| || || ||||| || || |||||||| ||| || | |||||||||||| Sbjct 43330061 ATGTAAGGTGGACTCTTTCTGAATATTGTAATCAGCCAAGGTACGACCATCTTCCAATTG 43330002 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 || || ||| ||||||||||||| || || ||| | |||||| ||||| ||| || Sbjct 43330001 CTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGAATCTT 43329942 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 | ||||| | ||| || ||| |||| |||| ||||||||| || || || Sbjct 43329941 TGCCTTCACACTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCTGT 43329882 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| |||||||| Sbjct 43329881 TAAAGTTTTCACAAATATTTGCAT 43329858 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| | ||||| || ||||| || || || || || || ||| || | |||||| Sbjct 43337628 CACAAGATGTAAAGTGGATTCCTTCTGAATATTATAGTCCGCCAAGGTACGACCATCTTC 43337569 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 |||||| || || ||| ||||||||||||| ||||| || | ||| || ||||| Sbjct 43337568 CAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTG 43337509 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| ||| ||| || | | ||| || ||| |||| |||| ||||||||| || Sbjct 43337508 AATCTTTGCTTTAACATTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTCTT 43337449 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||| ||||| ||||| |||||||| Sbjct 43337448 CCCTGTCAGAGTTTTCACAAATATTTGCAT 43337419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| |||||||| || || || ||||| || ||||||||||| | Sbjct 43329628 CCACCACGAAGCCTCAAAACCAAATGCAGAGTGGACTCTTTCTGGATGTTGTAATCCGCA 43329569 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | |||||| || ||| | ||||||||||| || || || Sbjct 43329568 AGGGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGA 43329509 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || ||||| ||| || |||||| | ||| | ||| | ||| Sbjct 43329508 ATACCCTCCTTGTCCTGAATCTTGGCTTTCACGTTATCAATGGTATCTGAACTTTCAACC 43329449 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || || ||||| || || |||||||| ||||| Sbjct 43329448 TCCAAAGTTATGGTCTTTCCCGTCAAAGTCTTCACAAAAATCTGCAT 43329402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || ||| ||||| || || || || || || || ||||||||||| | Sbjct 43329400 CCACCACGAAGCCGCAAAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCA 43329341 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||| ||||| || ||| | ||||||||||| || || || Sbjct 43329340 AGGGTTCTTCCATCTTCCAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 43329281 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || ||||| ||| || |||||| | ||| | ||| | ||| Sbjct 43329280 ATACCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATCGTATCTGAACTTTCAACC 43329221 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| || || || || ||||| |||||||| ||||||||||| Sbjct 43329220 TCCAAGGTGATAGTCTTTCCCGTCAAAGTTTTGACGAAAATTTGCAT 43329174 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| | | ||||||||| || || || || || || |||||||||||| | Sbjct 43336733 CCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCG 43336674 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | || || | || ||||| ||| |||| |||||||||||||| || Sbjct 43336673 AGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGG 43336614 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| || || |||||| | | | | | || |||| Sbjct 43336613 ATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGAGCTTTCCACC 43336554 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||| || |||||||| ||||| ||||| || ||||| Sbjct 43336553 TCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||||||||||||||| || ||||| || || || |||||||| | | || ||| Sbjct 43337403 CAACACCAAATGTAGAGTGGATTCCTTCTGGATATTGTAATCAGCAAGGGTACGCCCATC 43337344 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || || || ||| | ||||||||||| || || || | ||| || || || Sbjct 43337343 TTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTATC 43337284 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| || ||||| | | ||| || ||| | ||| |||| || ||||| Sbjct 43337283 CTGAATCTTAGCCTTCACATTGTCAATAGTATCAGAACTTTCAACCTCCAAAGTTATGGT 43337224 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || ||||| || || |||||||| ||||| Sbjct 43337223 CTTCCCTGTCAAAGTCTTCACAAAAATCTGCAT 43337191 >seq537 Length=160394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| |||||| ||||||| | | ||||||||||||||| ||||| ||||| |||||||| Sbjct 154723 TTTAATCATTGTTCCTCCCCTGAGCCTCAACACCAAATGAAGTGTTGATTCCTTTTGTAT 154782 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||| ||||| | | ||| | |||||||| || || || || |||| | |||||| Sbjct 154783 GTTATAATCAGCAAGAGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAACCTCTG 154842 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||| ||||| Sbjct 154843 CTGGTCAGGAGGGATACCTTCCTTGTC 154869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419400365162616