Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8 111 1e-19 seq6 104 2e-17 seq11 98.7 8e-16 seq2 95.1 1e-14 seq706 93.3 4e-14 seq848 87.8 2e-12 seq537 86.0 5e-12 >seq8 Length=20383548 Score = 111 bits (122), Expect = 1e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||| ||| || | Sbjct 13445054 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAA 13445113 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| || ||| | | ||||||||| || || ||||| | Sbjct 13445114 TATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 13445173 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | ||||||| ||| | ||||| |||||||| || || |||||| Sbjct 13445174 GTCG--ATGGTGTCCGAAGACTCCACCTCCAGGGTTATCGTTTTACCCGTTAGGGTTTTC 13445231 Query 48713 ACAAAAATCTGCATCGTGT 48731 || |||||||||||||||| Sbjct 13445232 ACGAAAATCTGCATCGTGT 13445250 >seq6 Length=23791330 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 10734058 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 10733999 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| ||| | | ||||||||| || || Sbjct 10733998 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 10733939 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | ||||||| ||| | ||||| |||||||| | Sbjct 10733938 GCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCCACCTCCAAGGTTATCGTTTTACCCG 10733881 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGT 48729 | || |||||||| || ||||||||||| Sbjct 10733880 TTAGGGTTTTCACGAAGATCTGCATCGT 10733853 >seq11 Length=48970052 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTC 48573 || ||| ||||| || ||| |||||| |||||||||||||| || | || | |||| Sbjct 43329158 TAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTC 43329099 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| || | |||| | | ||| |||||| || | || ||||| || Sbjct 43329098 CTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGGATACCCTCCTTATC 43329039 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || || | | ||||||| || | ||| ||||| || ||||| Sbjct 43329038 CTGGATCTTGGCTTTCACATTGTCTATGGTGTCTGAGCTTTCCACCTCGAGGGTGATGGT 43328979 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| | |||||||||||| ||||||||| Sbjct 43328978 CTTACCGGTCAAAGTTTTCACAAAGATCTGCATC 43328945 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTC 48573 || ||| ||||| || ||| |||||| |||||||||||||| || | || | |||| Sbjct 43336719 TAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTC 43336660 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| || | |||| | | ||| |||||| || | || || ||||| Sbjct 43336659 CTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGGATACCCTCTTTGTC 43336600 Query 48634 CATAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 | || || |||| || | || ||||| || | ||| ||| | || || Sbjct 43336599 CTGGATCTT-GGCTTTCACATTGTCG--ATGGTGTCTGAGCTTTCCACCTCAAGGGTGAT 43336543 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| |||||||| | |||||||||||| ||||||||| Sbjct 43336542 GGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCATC 43336506 >seq2 Length=36921656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCTCCAGCTG 48582 ||||| ||| |||||| ||||| ||||| || || || ||| | | ||||||||||| Sbjct 32544550 TGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGC-AAGGGTCCTCCCATCCTCCAGCTG 32544608 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | |||||| ||| || | | |||||||||| ||||| Sbjct 32544609 CTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTT 32544668 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | ||||| || | |||| ||| | || ||||| ||||| || Sbjct 32544669 CGCCTTCACATTGTCAATGGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTTACCCGT 32544728 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || ||||||||||| Sbjct 32544729 GAGAGTTTTAACGAAAATCTGCAT 32544752 >seq706 Length=122390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| |||||||| ||||||||||| || | |||| | ||||| Sbjct 23036 CACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTTCGCCCATCCTC 23095 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | |||| | ||||||||| || || | | ||||||||| Sbjct 23096 AAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTG 23155 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | |||||||||||| | |||| |||| || ||||| || Sbjct 23156 AATCTTGGCCTTCACGTTATCTATGGTATCGGAACTCTCCACTTCGAGAGTGATGGTCTT 23215 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || || || ||||| || |||||| Sbjct 23216 ACCAGTCAGGGTCTTAACAAAGATTTGCATC 23246 >seq848 Length=99386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| ||||||||| ||||||||||| || | || | ||||| Sbjct 56520 CACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGGCGAGGGTACGGCCATCCTC 56461 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | ||| ||||| || || | | ||||||||| Sbjct 56460 AAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTG 56401 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | |||||||||| | | ||| |||| || |||||||| Sbjct 56400 AATTTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCTACTTCGAGAGTGATGGTTTT 56341 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||||||| || || || || || |||||| Sbjct 56340 ACCGGTGAGGGTCTTAACGAAGATTTGCATC 56310 >seq537 Length=160394 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | | ||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 154736 CCTCCCCTGAGCCTCAACACCAAATGAAGTGTTGATTCCTTTTGTATGTTATAATCAGCA 154795 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | || |||||||||||||| || |||| || | |||||| || || Sbjct 154796 AGAGTG-CGACCATCTTCCAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCAGGAGG 154854 Query 48619 CACACTTTCCTTGTCC 48634 | || |||||||||| Sbjct 154855 GATACCTTCCTTGTCC 154870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421063624212536