Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 113 2e-20 seq203 111 8e-20 seq57 111 8e-20 seq11 109 3e-19 seq8 109 3e-19 seq6 109 3e-19 seq1 107 1e-18 seq287 105 3e-18 seq832 98.7 5e-16 seq556 98.7 5e-16 seq7949 86.0 3e-12 seq246 82.4 4e-11 >seq3 Length=29476785 Score = 113 bits (124), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAA--ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| ||| ||| || |||| || ||| ||||||||| | | |||||||| ||||||| Sbjct 18946735 AAAAATAAAATAAAGCAAAATAATGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTT 18946676 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| ||||||||||||||| |||| Sbjct 18946675 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 18946633 Score = 98.7 bits (108), Expect = 5e-16 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 2925333 AAAAAAAATTCA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAT 2925277 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||| ||| |||| Sbjct 2925276 GACGCTCTAACCAACTGAGCAAATAGGCC 2925248 >seq203 Length=344978 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 29257 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 29198 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 29197 CAACTGAGCTAATAGGCC 29180 Score = 105 bits (116), Expect = 3e-18 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || ||||||||| | | |||||||| ||||||| ||||||||||||||| Sbjct 34831 TAAAAAAGCA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACGA 34775 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||| ||||| Sbjct 34774 CGCTCTAACCAACTGAGCTAATAGGCCG 34747 >seq57 Length=597467 Score = 111 bits (122), Expect = 8e-20 Identities = 84/98 (86%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||| ||| | ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 183556 AATAAAAACCCAACTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 183615 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACG 11536 |||||||||| ||||||||||||||| |||| ||||| Sbjct 183616 ACGACGCTCTAACCAACTGAGCTAATAGGCC--CGACG 183651 >seq11 Length=48970052 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAA--AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||| ||| || |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 4156404 AATAAACAAAAACACTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 4156345 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 4156344 ACGACGCTCTAACCAACTGAGCTAATAGGCC 4156314 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 18863321 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18863262 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 18863261 TGAGCTAATAGGCC 18863248 >seq8 Length=20383548 Score = 109 bits (120), Expect = 3e-19 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||||| |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 8353057 AAAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 8352999 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 8352998 TCTAACCAACTGAGCTAATAGGCC 8352975 Score = 107 bits (118), Expect = 1e-18 Identities = 83/99 (84%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||||| ||| | || || ||| ||||||||| | | |||||||| ||||||||||| Sbjct 14262393 ATATAAAATAATTATAATATC----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 14262448 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| ||||||||||||||| |||| Sbjct 14262449 TTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 14262487 Score = 98.7 bits (108), Expect = 5e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| |||| || || ||| || | ||||||||| | | |||||||| ||||||| Sbjct 7928532 AAATA-AGAACAAAAAATAAAAGAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTG 7928474 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||| ||||||||||||||| |||| Sbjct 7928473 GCGTTATTAGCACCACGCTCTAACCAACTGAGCTAATAGGCC 7928432 >seq6 Length=23791330 Score = 109 bits (120), Expect = 3e-19 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||||| |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 15929015 AAAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 15929073 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 15929074 TCTAACCAACTGAGCTAATAGGCC 15929097 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 9620618 AAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 9620559 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 9620558 AACTGAGCTAATAGGCC 9620542 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||| | || ||||| |||||||| | | |||||||| |||||||||||||||||| Sbjct 9620826 ATTAAAATAAGGGCAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 9620768 Query 11498 CACGACGCTCTRACCAA 11514 ||||||||||| ||||| Sbjct 9620767 CACGACGCTCTAACCAA 9620751 >seq1 Length=17676265 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 16345910 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 16345969 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 16345970 CAACTGAGCTAATAGGCC 16345987 >seq287 Length=274606 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 30744 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 30685 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 30684 TGAGCTAATAGGCCG 30670 >seq832 Length=101711 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| || Sbjct 37584 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 37525 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 37524 CAACTGAGCTAATAGGCC 37507 >seq556 Length=155520 Score = 98.7 bits (108), Expect = 5e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| | ||| || || | ||| | ||||||||| | | |||||||| ||||||| Sbjct 11064 GAAATAAA-AATGAA-AATATATCTTAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTG 11121 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||| ||||||||||||||| |||| Sbjct 11122 GCGTTATTAGCACCACGCTCTAACCAACTGAGCTAATAGGCC 11163 >seq7949 Length=1244 Score = 86.0 bits (94), Expect = 3e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||| | |||| | | ||| || | |||||||||||||||||||| |||| ||| || Sbjct 49 AAATTGACACATGCAGGTCTCGGACATGCGACCTTCGCGTTATTAGCAAGACGATCTAAC 108 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 ||||||||||||| |||| || Sbjct 109 CAACTGAGCTAATAGGCCATC 129 >seq246 Length=308227 Score = 82.4 bits (90), Expect = 4e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||| ||||||||||||| | ||||| ||||||||||||||| |||| Sbjct 275057 TCGAACCTGCGACCTTGGCGTTATTAGCACCAAGCTCTAACCAACTGAGCTAATAGGCC 275115 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261374762544736