Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 seq5 100 4e-16 seq3 86.0 8e-12 >seq2 Length=36921656 Score = 120 bits (132), Expect = 4e-22 Identities = 242/354 (68%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||| | ||| ||||||||||| || ||||| Sbjct 1442773 CAGGCGAAGTCGCAGTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGG 1442714 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| | ||| ||||| || ||||| || ||||| ||| |||||| |||||| Sbjct 1442713 CCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATGGAGCAGAAGCTTCCAGAGAAGAAG 1442654 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33482 ||||| || || ||| || ||||| | | | ||| | | | || | | || Sbjct 1442653 ATTCCCTCGAC-GCAGGCGAAGGCGACGATGCGCTCAGCGAAGGAGTCGGAGGAGTCGAT 1442595 Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 ||| | ||||| | ||||||||| || || || || ||||| ||||| | || Sbjct 1442594 CCAGCGCAGGGCCCATTGGGCCTTCTTGGCAACGCAGGGGATGGTTTCGATGGCGTGGAA 1442535 Query 33543 GAGATAGtttttttCATTACTATCT-TTAACATAAGTATCGATCAAAAGACTATACATTT 33601 ||| | || || || | | || || | || || |||| | || || ||||| | Sbjct 1442534 GAGGTGGTGCTTCTC-GTCGGAGCTCTTGATGTAGGTTTCGAGGAGGAGGCTGTACATCT 1442476 Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 | || || ||||| || ||||| || || || |||||||| | |||||||| Sbjct 1442475 CGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGG 1442422 >seq5 Length=5133333 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | ||| || | ||| | || | || |||||| | |||||| Sbjct 4457650 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGGACAATACC 4457709 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 |||||| | ||||| || || || || || ||| |||||||||| | | ||| || Sbjct 4457710 ATTTGATGTCCCATTTGTGCCACGAATGTAACTGCCAGTGGCACGAATGTCATGAATAGA 4457769 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| ||||| ||| ||||| || || || || |||||||| || Sbjct 4457770 AACACCAATTCCTCCTGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATAT 4457829 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 |||||||||||||||| ||||| || || || || ||| Sbjct 4457830 TCCCTCTATGCTATCATTTTTCATGCAGAGAAGGAAGCAACTA 4457872 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | || || || || || || |||||| | | ||| | | || Sbjct 4458433 GTTCCTGCATTGAAAATAGTGGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 4458492 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | | ||| || || || || | ||| |||||||| || || || | ||| || Sbjct 4458493 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 4458551 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| ||||| || | ||| | | |||||||| ||||| | ||||| Sbjct 4458552 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAACAAATAGGACCTCTCCAA 4458611 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| |||||||| || | || |||||| | |||||||| || Sbjct 4458612 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 4458659 >seq3 Length=29476785 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | || || | ||| | || | ||||||||||| || ||| Sbjct 2832867 TCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGCAACATTGGAACAACACC 2832926 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || || | ||||| ||||| ||||| |||||| ||||||| || || || || Sbjct 2832927 ATTGGAAGTCCCATTTGTACCACGAATATAACTTCCAGTGGCACGTATGTTGTGAACAGA 2832986 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 2832987 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATAT 2833046 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 |||||||| |||||||| ||||| Sbjct 2833047 CCCCTCTATACTATCATCTTTCATG 2833071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | || ||||| || || || |||||| ||| || | | | | Sbjct 2833264 GTTCCGGCATTGAAAAGAGTTGGAGATGCATGGGTGAACCATCTTTGGGACATCATGTGG 2833323 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | | | | || ||||| || | ||| |||||||| || ||||| | ||| || Sbjct 2833324 TAAGTTTTGACAACAGAATCTATGTCATCCTTG-TGAATTCCAACAGCGACCCTCATCAA 2833382 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| ||||| || | ||| || | ||||| | ||| || | || | Sbjct 2833383 CATGTGCTGAGGCCTTTCCACAACCTTTCCATTAACCTTCAAGAGGTACGACCTCTCAAG 2833442 Query 63791 AGTTTTAAAACCAAAATA 63808 ||||| || |||||||| Sbjct 2833443 GGTTTTGAACCCAAAATA 2833460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622662700013760