Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 105 2e-17 seq531 100 7e-16 seq3 84.2 6e-11 >seq5 Length=5133333 Score = 105 bits (116), Expect = 2e-17 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||||| ||||| | ||| ||| ||||| || | |||||| | ||| | Sbjct 4457869 TTGCTTCCTTCTCTGCATGAAAAATGATAGCATAGAGGGAATATATGACACTTTGAAGGA 4457810 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | || ||| ||||| ||||||||||| || || || | ||||||| Sbjct 4457809 GTGTGCTATAATCAGCAAATCAGCAGGAGGAATTGGTGTTTCTATTCATGACATTCGTGC 4457750 Query 363726 -ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 || | |||||||||||| ||||| | |||| | || ||||| | || || ||||| Sbjct 4457749 CACTGG-CAGTTACATTCGTGGCACAAATGGGACA-TCAAATGGTATTGTCCCAATGCTG 4457692 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||||||| | ||||||| | || || || || || ||||| ||| | ||||| Sbjct 4457691 CGTGTGTTCAATGATACTGCTCGCTATGTTGATCAAGGGGGAGGCAAGAGGAAAGG 4457636 >seq531 Length=161886 Score = 100 bits (110), Expect = 7e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | ||| | | ||||| |||||||| |||||||||||||| || Sbjct 63271 CAGTTTTATGTAGCTCATGGGGAGTTATCATGTCAAATGTACCAGCGATCTGCTGACATG 63212 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| |||||||| ||||||||||| ||| || || || || ||| | || |||||| Sbjct 63211 GGTCTGGGTGTTCCATTTAATATTGCTTCTTATGCCCTCCTGACATGCATGATTGCTCAT 63152 Query 111822 TTT 111824 || Sbjct 63151 GTT 63149 >seq3 Length=29476785 Score = 84.2 bits (92), Expect = 6e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || ||| || ||||| || | ||| || | ||| | Sbjct 2833086 TTGCTTCCTTGTGTGCATGAAAGATGATAGTATAGAGGGGATATATGAAACTTTGAAGGA 2833027 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG- 363724 |||||| | || ||| || || ||||||||||| || | ||||| | |||| Sbjct 2833026 GTGTGCTATCATCAGCAAATCAGCTGGAGGAATTGGTGTCTCTGTTCACAACATACGTGC 2832967 Query 363725 CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 ||| | | ||||| ||||| || ||| || || ||||| | ||||| ||| | | Sbjct 2832966 CACTGGA-AGTTATATTCGTGGTACAAATGGGACTTCCAATGGTGTTGTTCCAATGTTGC 2832908 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||||||| | ||||||| |||| || || || || ||||| ||| | ||||| Sbjct 2832907 GTGTGTTCAATGATACTGCCCGGTATGTTGATCAAGGAGGAGGCAAGAGGAAAGG 2832853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302743477371152