Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq11 123 2e-23 seq706 113 4e-20 seq6 102 7e-17 seq2 100 2e-16 seq848 98.7 8e-16 seq8 89.7 4e-13 >seq11 Length=48970052 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||| ||||| | |||| | ||||| Sbjct 43336718 AGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTCC 43336659 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| ||| |||| |||| |||||| ||| ||| | ||||||||||| Sbjct 43336658 TCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGGATACCCTCTTTGTCC 43336599 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | ||||| | ||| || | |||||||| Sbjct 43336598 TGGATCTTGGCT--TTCACATTGTCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGG 43336541 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| ||||| ||||| |||||||| Sbjct 43336540 TCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||| ||||| | |||| | ||||| Sbjct 43329157 AGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTCC 43329098 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| ||| |||| |||| |||||| ||| ||| | ||||| || || Sbjct 43329097 TCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGGATACCCTCCTTATCC 43329038 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | ||||| | ||| || | |||||||| Sbjct 43329037 TGGATCTTGGCT--TTCACATTGTCTATGGTGTCTGAGCTTTCCACCTCGAGGGTGATGG 43328980 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| ||||| ||||| |||||||| Sbjct 43328979 TCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 >seq706 Length=122390 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| |||||||| || |||| |||| | | ||| Sbjct 22806 AGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGGCCATCC 22865 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| |||| |||| ||||||||| || | |||||||||||| Sbjct 22866 TCAAGCTGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCTTTGTCT 22925 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | ||||| | |||| || | ||| |||| Sbjct 22926 TGAATCTTGGCT--TTAACATTGTCTATGGTGTCAGAGCTCTCCACCTCAAGGGTTATGG 22983 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | ||||| || || || || |||||||| |||||| Sbjct 22984 TCTTTCCTGTGAGAGTCTTAACAAAAATTTGCATT 23018 >seq6 Length=23791330 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || ||||||||||| || || |||||||| || Sbjct 23717308 CCACCACGGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGCA 23717367 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| ||||| || || || ||| | || |||| ||| |||||| ||| Sbjct 23717368 AGGGTCCTCCCGTCTTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGAGGA 23717427 Query 16829 ACGCCCTCTTTGTCGGCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| ||| |||| |||||| | | | | ||||| |||| Sbjct 23717428 ATTCCCTCCTTGTCCTGAATCTTGC-CCTTCACATTGTCAATGGTGTCTGAACTCTCCAC 23717486 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||| || ||||||||||||||||| Sbjct 23717487 CTCAAGGGTGATGGTCTTCCCCGTCTAGGTCTTGACAAAAATCTGCAT 23717534 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||| | || Sbjct 10734058 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 10733999 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| || | |||||| ||||| || || Sbjct 10733998 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 10733939 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | |||| |||| ||| || ||||| || | Sbjct 10733938 GC--CTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTTATCGTTTTACCCG 10733881 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || |||||||| Sbjct 10733880 TTAGGGTTTTCACGAAGATCTGCAT 10733856 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||| || | ||| | ||||| | ||| Sbjct 23717560 TGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGTCCATCCTCAAGCTGT 23717619 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| | || || ||||| || | ||||| ||||| ||| | Sbjct 23717620 TTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTG 23717679 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| || | ||||||||| |||||||| Sbjct 23717680 GACTTTACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTG 23717739 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || |||||||| || |||||||| Sbjct 23717740 AGGGTTTTGACGAATATCTGCAT 23717762 >seq2 Length=36921656 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || ||||||||||| || || ||||||||||| Sbjct 32544526 CCCCCACGAAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGCA 32544585 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || || || ||| | || | || ||| |||||| || Sbjct 32544586 AGGGTCCTCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGG 32544645 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| |||| | |||||| | | | | ||||| | |||| Sbjct 32544646 ATGCCTTCCTTGTCCTGGATTTTCGCCTTCACATTGTCAATGGTGTCCGAGCTCTCCACC 32544705 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||| ||||| || || || || ||||| || |||||||||||| Sbjct 32544706 TCCAAGGTAATGGTCTTACCCGTGAGAGTTTTAACGAAAATCTGCATT 32544753 >seq848 Length=99386 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| |||||||| || || | |||| || | ||| Sbjct 63823 AGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCTAGGGTTCTGCCATCC 63764 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| ||||||||| || ||||| || | ||| |||||||| Sbjct 63763 TCGAGCTGTTTCCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCT 63704 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | ||||| | |||| || | ||||||||| Sbjct 63703 TGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTC 63644 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || || || || ||||| Sbjct 63643 TTACCGGTGAGAGTCTTAACGAAGATTTGCAT 63612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| ||||| ||||| |||| ||| | | ||| Sbjct 56750 AGAACCAAGTGTAGAGTGGACTCCTTTTGAATGTTATAGTCTGCCAAAGTTCGGCCATCC 56691 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| |||| |||| || ||||| || | ||| |||||||| Sbjct 56690 TCGAGCTGTTTCCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCC 56631 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | ||||| | |||| || | |||||| || Sbjct 56630 TGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATTGTC 56571 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||||| || || || ||||| || |||||| Sbjct 56570 TTTCCGGTTAGGGTCTTCACAAATATTTGCATT 56538 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| || | || | ||||| | ||| Sbjct 64042 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCAAGCTGT 63983 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| |||| |||| ||||||||| || | ||||||||||| ||| | Sbjct 63982 TTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTA 63923 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||| | ||| ||| | ||||||||| ||||| || Sbjct 63922 GCCTTGACATTATCTATGGTGTCTGAGCTCTCAACTTCAAGGGTGATGGTCTTTCCAGTG 63863 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||| || |||||| Sbjct 63862 AGAGTCTTAACAAATATTTGCATT 63839 >seq8 Length=20383548 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| |||||||| || |||||||||||||| | ||| | ||||||||| || Sbjct 13445043 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 13445102 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| ||||| || | ||||| ||||| || || Sbjct 13445103 TTTCCGGCGAATATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTG 13445162 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | |||| |||| ||| || ||||| || | Sbjct 13445163 GC--CTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTTATCGTTTTACCCG 13445220 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||||||||| Sbjct 13445221 TTAGGGTTTTCACGAAAATCTGCAT 13445245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404907621402640