Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 seq3 100 4e-16 >seq5 Length=5133333 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || || || || ||||| |||||| | | ||| | | || Sbjct 4458433 GTTCCTGCATTGAAAATAGTGGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 4458492 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | | ||| || || || || | ||| |||||||| || || || | ||| || Sbjct 4458493 TAAGTTTTGACAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 4458551 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| ||||| || | ||| | | |||||||| ||||| | ||||| Sbjct 4458552 CATGTGCTGAGGCCTTTCCACAACCTTTCCTTGAACCTTCAACAAATAGGACCTCTCCAA 4458611 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| |||||||| || | || |||||| | |||||||| || Sbjct 4458612 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 4458659 >seq3 Length=29476785 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | ||| | || | ||||||||||| || ||| Sbjct 2832867 TCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGCAACATTGGAACAACACC 2832926 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 |||||| || ||||| || || ||||| |||||| ||||||| || || || || Sbjct 2832927 ATTGGAAGTCCCATTTGTACCACGAATATAACTTCCAGTGGCACGTATGTTGTGAACAGA 2832986 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 2832987 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATAT 2833046 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||||||||||||||||| ||||| Sbjct 2833047 CCCCTCTATACTATCATCTTTCATG 2833071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || ||||| || || || |||||| ||| || | | | | Sbjct 2833264 GTTCCGGCATTGAAAAGAGTTGGAGATGCATGGGTGAACCATCTTTGGGACATCATGTGG 2833323 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | | | | || ||||| || | ||| |||||||| || ||||| | ||| || Sbjct 2833324 TAAGTTTTGACAACAGAATCTATGTCATCCTTG-TGAATTCCAACAGCGACCCTCATCAA 2833382 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| ||||| || | ||| || | ||||| | ||| || | || | Sbjct 2833383 CATGTGCTGAGGCCTTTCCACAACCTTTCCATTAACCTTCAAGAGGTACGACCTCTCAAG 2833442 Query 63646 AGTTTTAAAACCAAAATA 63663 ||||| || |||||||| Sbjct 2833443 GGTTTTGAACCCAAAATA 2833460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633342620265600