Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 185 2e-41 seq3 102 2e-16 seq11 96.9 7e-15 seq523 95.1 2e-14 seq1382 93.3 9e-14 seq7 93.3 9e-14 seq6 93.3 9e-14 seq1 91.5 3e-13 seq83 87.8 4e-12 seq24 87.8 4e-12 seq931 86.0 1e-11 >seq2 Length=36921656 Score = 185 bits (204), Expect = 2e-41 Identities = 558/854 (65%), Gaps = 27/854 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || |||||||| | ||| |||| || || || |||||||| |||| || ||||| Sbjct 1443040 TCAAAGAAATTGGTCTTCCCCTGCAACGAAATCAGCTCCATCCAGTCAAAAGGGTTCTGA 1442981 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| ||| |||||| || || || | || || ||||||||||| | Sbjct 1442980 ACATTGTACACCTTCCCGCAGCCAAGCGCAACCAACAAACGATCCGCCACAAACTCAATG 1442921 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA-CAAGGAATTGCCTCACAGAT 251741 ||||| ||||||| || ||||| || | || ||| || |||| || || || | Sbjct 1442920 TACTGACCCATCAACTCCCCATTCATCCCCAGCA-ACGCGCACGGAAGCGCGTCGCACAC 1442862 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || ||| | ||| | | || || ||| ||| || ||||||| | || || Sbjct 1442861 AAACTCCCTCTCGATATCCACAGCGTCCCTCACGATCTCCTTCACGCGCTCCTCGCTGAG 1442802 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 ||| ||| |||| ||||||| ||| | | || | ||| || ||||||||||| Sbjct 1442801 CTTCTTCCTCAGCAGAGAGTACAAGAGGCAGGCGAAGTCGCAGTGAAGCCCCTCGTCGCG 1442742 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 |||| |||||||| | | ||||||||||||| || || ||| |||||||||| Sbjct 1442741 GGAAATGAGTTCGTTGGAGAAAGTGAGGCCAGGCATCAAGCCGCGCTTCTTGAGCCAGAA 1442682 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 || | ||| ||| ||||||||| | | |||||||| || | | || || | ||| Sbjct 1442681 AATGGAGCAGAAGCTTCCAGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCGACGATGCG 1442622 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAAGA---ACTTCTGTGCCCATGCTGCCTTCTTTCC 252038 |||||| || || ||| || || | | | |||||| |||||||| | Sbjct 1442621 CTCAGCGAAGGA---GTCGGAGGAGTCGATCCAGCGCAGGGCCCATTGGGCCTTCTTGGC 1442565 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 ||| |||||| |||||||| || | ||||| || | |||| | | || ||| Sbjct 1442564 AACGCAGGGGATGGTTTCGATGGCGTGGAAGAGGTGGTGCTTCTCGTCGGAGCTCTTGAT 1442505 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | | || || ||||| ||||||||| || |||||| ||| || || ||| | Sbjct 1442504 GTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAA 1442445 Query 252159 AGCATAGAATAGACGCGCGGAAGGGTCGGTGACT------TCCGTGGAAAAGTTGTTTGC 252212 | |||| || |||| || |||| |||| ||| | ||| | || Sbjct 1442444 GCCGTAGA--AGGCGCG----AGCCTCGGCGACTTGGATCTCCTTCATGAAGCGGCCGGC 1442391 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | ||||| | || ||||| ||| | | ||||||||| | || | | ||| ||| Sbjct 1442390 GAGATTCTCGAGGACGATGCCGTCGGAGGCGGCAAAGAAGGCGAGGACGTGGGTGACGAA 1442331 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--A 252330 ||| || || ||||| |||| ||| ||||| | | |||||| ||||| Sbjct 1442330 GTGGCGTTCGCCGTCGGTGAGGGAGTC---CCAGTGGCGGAGGTCCTG--CGAGAGGTCG 1442276 Query 252331 ACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGG 252390 || || ||| |||||||||| | || | || |||||||||||| | | | | ||| Sbjct 1442275 ACCTCCTCCGCCGTCCAGAAAGAGGCTTCGGCTTTCTTGTACATTTCCCAGATTTGGGGG 1442216 Query 252391 TACTTGATTGGGAA 252404 |||| ||||||||| Sbjct 1442215 TACTGGATTGGGAA 1442202 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 11419477 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11419418 Query 142563 CCCCAC 142568 |||||| Sbjct 11419417 CCCCAC 11419412 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 11420957 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11420898 Query 142563 CCCCAC 142568 |||||| Sbjct 11420897 CCCCAC 11420892 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 34319875 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 34319934 Query 142563 CCCCAC 142568 |||||| Sbjct 34319935 CCCCAC 34319940 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 5747955 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5748014 Query 142564 CCCAC 142568 ||||| Sbjct 5748015 CCCAC 5748019 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 36133608 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 36133667 Query 142564 CCCAC 142568 ||||| Sbjct 36133668 CCCAC 36133672 >seq3 Length=29476785 Score = 102 bits (112), Expect = 2e-16 Identities = 193/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 218525 TCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGG 218584 || |||| ||||| || | ||||| || ||| | | | || |||||| ||| Sbjct 23252675 TCAACAAAGAGCTTATATTGTTCTCCAGGGCGGATCTTCAAAGGTCCATTCCCTCGATGG 23252616 Query 218585 TGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGG 218644 | |||||||||||||| || | ||||| || || | |||| ||| ||| || Sbjct 23252615 TTGATGGCCTCAAGCCTGGTCAAAGGAAGATTCTTTTCTGCTCATTTAAGAAGAAGTTGT 23252556 Query 218645 TTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATC 218704 | ||||||| || || | |||||| ||||||||| || || |||| ||||| | Sbjct 23252555 TCAAAGAAATAAAAGTAGGCCAGTTTATTGGTTATGTGTCTGAGCACTCTGCTTACCACC 23252496 Query 218705 ACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTA 218764 | |||||||| ||||| | | ||| | |||||||||||| | |||||| || | Sbjct 23252495 ATGGTGAGCAAAGTCTAGCCAGCACAATTATTAACATGGCACAGGATTTTGTGGGTAGCA 23252436 Query 218765 ACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||| || || | || || || ||||| |||||| ||||| Sbjct 23252435 ACAATATCAATCTCCTTAAACCAAATGGTCAATTTGGTACTCGT 23252392 >seq11 Length=48970052 Score = 96.9 bits (106), Expect = 7e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 3110817 ATAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 3110876 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 3110877 AGCCCCAC 3110884 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 28667122 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 28667181 Query 142564 CCCAC 142568 ||||| Sbjct 28667182 CCCAC 28667186 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 11596251 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11596310 Query 142563 CCCCAC 142568 |||||| Sbjct 11596311 CCCCAC 11596316 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 2084224 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2084283 Query 142564 CCCAC 142568 ||||| Sbjct 2084284 CCCAC 2084288 >seq523 Length=164983 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 109140 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 109199 Query 142562 GCCCCAC 142568 ||||||| Sbjct 109200 GCCCCAC 109206 >seq1382 Length=54839 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 4593 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4652 Query 142563 CCCCAC 142568 |||||| Sbjct 4653 CCCCAC 4658 >seq7 Length=19579009 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 11179877 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11179936 Query 142563 CCCCAC 142568 |||||| Sbjct 11179937 CCCCAC 11179942 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 13326771 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13326830 Query 142563 CCCCAC 142568 |||||| Sbjct 13326831 CCCCAC 13326836 >seq6 Length=23791330 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 4391351 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4391410 Query 142563 CCCCAC 142568 |||||| Sbjct 4391411 CCCCAC 4391416 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 21760939 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 21760880 Query 142563 CCCCAC 142568 |||||| Sbjct 21760879 CCCCAC 21760874 >seq1 Length=17676265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1127433 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1127374 Query 142564 CCCAC 142568 ||||| Sbjct 1127373 CCCAC 1127369 >seq83 Length=517288 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 315411 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 315352 Query 142563 CCCCAC 142568 |||||| Sbjct 315351 CCCCAC 315346 >seq24 Length=939071 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 735048 AGCCTGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 734989 Query 142563 CCCCAC 142568 |||||| Sbjct 734988 CCCCAC 734983 >seq931 Length=88782 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 57952 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 58011 Query 142564 CCCAC 142568 ||||| Sbjct 58012 CCCAC 58016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027355651606776