Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq6 109 7e-19 seq59 98.7 1e-15 seq8 95.1 1e-14 seq3 82.4 9e-11 >seq2 Length=36921656 Score = 127 bits (140), Expect = 2e-24 Identities = 376/573 (66%), Gaps = 29/573 (5%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || ||||| || |||||||| ||||| || |||||||| | ||| || |||||| Sbjct 1443058 TACTCCCCCACGCGCTTCTCAAAGAAATTGGTCTTCCCCTGCAACGAAATCAGCTCCATC 1442999 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC---------CCAATCTGTTTG 125869 | ||||| ||||||| || | ||||| |||| |||| | Sbjct 1442998 CAGTCAAAAGGGTTCT--GA-----ACATTGTA--CACCTTCCCGCAGCCAAGCGCAACC 1442948 Query 125870 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 125929 | | |||||||| || |||||||||||| | |||| ||| ||||| || | Sbjct 1442947 AACAAACGATCCGCCACAAACTCAATGTACTGACCCATCAACTCCCCATTCATCCCCAGC 1442888 Query 125930 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACG 125989 | || || |||||||| | | ||| || |||| || ||||| || |||| |||| Sbjct 1442887 AACGCGCACGGAAGCGCGTCGCACACAAACTCCCTCTCGATATCCACAGCGTCCCTCACG 1442828 Query 125990 ATGGCGTGAATGGTGTCCACCCCAGGTCTATTGC---GCAAAGTCTTGAAGAGTTCCACG 126046 || | | | | ||| | | | | || | ||| || | ||||| || | Sbjct 1442827 ATCTCCTTCACGCGCTCCTCGCTGAGCTTCTTCCTCAGCAGAGAGTACAAGAGG--CA-G 1442771 Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 || || || ||| || |||||||| ||||| |||||||| || ||||| || || Sbjct 1442770 GCGAAGTCGCAGTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGGCCA 1442711 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | || |||||||| | ||||||||| | || || || |||||||||||| Sbjct 1442710 GGCATCAAGCCGCGCTTCTTGAGCCAGAAAATGGAGCAGAAGCTTCCAGAGAAGAAGATT 1442651 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226 ||||| || || ||||| || | || |||||||| |||||| || | ||| | | Sbjct 1442650 CCCTCGACGCAGGCGAAGGCGACGATGCGCTCAGCGAAGGAGTCGGA---GGAGTCGATC 1442594 Query 126227 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 126286 || || ||||| || ||||| || | | || |||| ||| | ||| || | ||| Sbjct 1442593 CAGCGCAGGGCCCATTGGGCCTTCTTGGCAACGCAGGGGATGGTTTCGATGGCGTGGAAG 1442534 Query 126287 AGTTCCTTCTTTTCTGATGGATCT-TTGATGTA 126318 || | | ||| || | ||| || |||||||| Sbjct 1442533 AGGTGGTGCTTCTC-GTCGGAGCTCTTGATGTA 1442502 >seq6 Length=23791330 Score = 109 bits (120), Expect = 7e-19 Identities = 197/286 (69%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 || ||||| ||| |||| || ||||| |||||| || || ||||||||||||||||| Sbjct 18589937 AACTACCGGGAAGCCTACGGCCTCTTCGCGTGCAATGGGATCCTCTTCAACCACGAGTCT 18589996 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA------CCGATGGTATCAAACAA 8762 |||||||| ||| | |||||||||| |||||||| ||| || || | Sbjct 18589997 CCCCGTCGCGGCGAGAATTTCGTGACTCGGAAGATCACGCGGGCCGTGGGCCGCATCAAG 18590056 Query 8763 ATCGTCGCGGGT-GAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 8821 |||| || | | || || | || ||||||||||| | ||| ||||| || Sbjct 18590057 ATCG----GGCTCCAAAGCAAGCTGTTT---TTGGGGAACCTTCAGGCCTCTAGGGATTG 18590109 Query 8822 GGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 8881 ||| ||| ||||||||| || ||||||||||| | || || || || || | || Sbjct 18590110 GGGCTTCGCTGGGGACTATGTGGAGGCCATGTGGCTGATGCTGCAGCAGGAGAAGCCTGA 18590169 Query 8882 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927 || ||||| || || || | ||| | ||| |||| ||||||| Sbjct 18590170 TGACTATGTTGTGGCCACTGAAGAGTCCCACACCGTGGAGGAGTTC 18590215 >seq59 Length=585201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 197/287 (69%), Gaps = 10/287 (3%) Strand=Plus/Plus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || ||||| | | ||||| ||||| || ||| | ||| || || || Sbjct 286596 ATCAAACCGGCCTGGTCTCAATAGGGCAGAATCAAGAATGTCAGCCCTGTTGGTTGCTGC 286655 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 ||||||| ||| || || | ||||| |||||||| || ||||| ||||| |||| Sbjct 286656 AATGACAATGATACCAGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 286715 Query 10909 GGTTTGTTCGCGTTCATCATTCGCGGGC---ATACCACCCGCACTGCGTTGCTTACCGAC 10965 ||| ||||| | |||||||||| | |||||| | | || || ||| || || Sbjct 286716 GGTCTGTTCTCTTTCATCATTCCCACCACCAATACCAGTCCCTCTTTGT--CTT-CCAAC 286772 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAG 11023 || ||||||||||| | || || || || || ||| || ||| |||| || Sbjct 286773 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTGAAC 286830 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 | ||| ||||||| ||||| ||||| |||||||| || ||||| Sbjct 286831 AAATCACGGACTCGAGAAGCACCAACACCAACAAACATCTCAACAAA 286877 >seq8 Length=20383548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 274/416 (66%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 10820 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 10879 ||||| || ||| | ||| || || || | ||||| ||| || || | ||||| Sbjct 11725105 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAACGACAATGATACCGGTATTACCCTCAAAT 11725046 Query 10880 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATA 10939 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | Sbjct 11725045 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 11724989 Query 10940 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAC 10996 ||| || | || | |||| | || || || ||||||||||| | |||| || ||| Sbjct 11724988 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAAAATAATGCAC 11724929 Query 10997 GGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || ||| || ||| |||| || | ||| ||||||| ||||| | ||| | Sbjct 11724928 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGGACTCGAGAAGCACCAATACCAA 11724871 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCC 11113 ||||||| || ||||| | | | | | |||| || || ||||| | |||||| Sbjct 11724870 CAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACCT 11724812 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCA 11173 || || || || | || |||||||| || ||||| || | ||||| |||| Sbjct 11724811 GCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACCT 11724752 Query 11174 CGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCAC 11229 ||| || | || ||| || ||| | |||||| | || || || ||||| Sbjct 11724751 TTTGGTATACGTGCCCCAACAGCAGTGTACCTCTCAGGCTTCTTTAGAAACTCCAC 11724696 >seq3 Length=29476785 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/130 (75%), Gaps = 6/130 (5%) Strand=Plus/Plus Query 173691 CGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 173750 ||||| |||||||| || ||||||| || | |||||| ||||| || |||||||| | Sbjct 23255925 CGATGACAAACTCCGTTGAGAAGATGTTTGTGAGCTTGGCGCCGTAACCGTTGCGTCCGC 23255984 Query 173751 CAACAATTCTCTTCTTG---TTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAATG 173807 | | |||||||| ||||| |||||||| |||| ||||||||||| || || Sbjct 23255985 CGG---TGGTCTTCTTGACGTTGTCGTCGTAGTTGCTACTGGTGAGGAGGTGTCCGAAGA 23256041 Query 173808 TAAGTTCTGG 173817 | ||||| || Sbjct 23256042 TGAGTTCGGG 23256051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597080788610880