Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 149 6e-31 seq11 118 1e-21 seq6 107 2e-18 seq8 98.7 1e-15 seq706 96.9 3e-15 seq848 89.7 5e-13 >seq2 Length=36921656 Score = 149 bits (164), Expect = 6e-31 Identities = 346/515 (67%), Gaps = 10/515 (2%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 || |||||| ||| ||||| || ||||| || |||||||| | | ||| | | Sbjct 1442556 CCCTGCGTTGCCAAGAAGGCCCAATGGGCCCTGCGCTGGATCGA---CTCCTCCGACTCC 1442612 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | || |||||||| || ||||||||| |||||||| | || || || || ||||| Sbjct 1442613 TTCGCTGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCTGGAAGCTTC 1442672 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 | |||| || | | || | | ||| | ||||| ||||| || ||| |||||| Sbjct 1442673 TGCTCCATTTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGCCTCACTTTCTCCAACGAA 1442732 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGC 52568 | || || |||||||| || || ||| ||||| || ||||||| ||| || Sbjct 1442733 CTCATTTCCCGCGACGAGGGGCTTCACTGCGACTTCGCCTGCCTCTTGTACTCTCTGC-- 1442790 Query 52569 GTGACCGAAAAATTGGATTCGGA-CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTAT 52627 ||| | || | ||| | || ||| || | | ||| || |||| ||| Sbjct 1442791 -TGAGGAAGAAGCTCAGCGAGGAGCGCGTGAAGGAG-ATCGTGAGGGACGCTGTGGATAT 1442848 Query 52628 CGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC 52687 ||| | ||||||| | | |||||| ||| || | ||||||| ||||| | | ||| Sbjct 1442849 CGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGCTGGGGATGAATGGGGAGTT 1442908 Query 52688 CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGC-CAA 52746 ||| | ||||||| |||||||||||||||||| ||||||| ||| ||| || | Sbjct 1442909 GATGGGTCAGTACATTGAGTTTGTGGCGGATCGTTTGTTGGTTGCGCT-TGGCTGCGGGA 1442967 Query 52747 AGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGA 52806 || | ||| | || || || ||||| | ||| | |||||| | |||| |||| Sbjct 1442968 AGGTGTACAATGTTCAGAACCCTTTTGACTGGATGGAGCTGATTTCGTTGCAGGGGAAGA 1443027 Query 52807 CCAACTTTTTCGAGAAGCGAGTCGGCGAGTATAAG 52841 |||| || || |||||||| || || |||||| || Sbjct 1443028 CCAATTTCTTTGAGAAGCGCGTGGGGGAGTATCAG 1443062 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | || | | | |||||||| ||||| ||||||||| Sbjct 32544526 CCCCCACGAAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGCA 32544585 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | ||||| || || || || | | |||| | | ||| |||||||| || Sbjct 32544586 AGGGTCCTCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGG 32544645 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || | ||||| | | |||||| | |||||| Sbjct 32544646 ATGCCTTCCTTGTCCTGGATTTTCGCCTTCACATTGT-CAATGGTGTCCGAGCTCTCCAC 32544704 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || ||||| || |||||||| || ||||||||||| Sbjct 32544705 CTCCAAGGTAATGGTCTTACCCGTGAGAGTTTTAACGAAAATCTGCAT 32544752 >seq11 Length=48970052 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| ||||| | || ||||| | | | |||||||| ||||||||||| ||| Sbjct 43336734 GCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGC 43336675 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | | ||||||||| || || || | | | || || | |||||| |||||||| Sbjct 43336674 GAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGG 43336615 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| |||||||| ||| || ||| | |||| || | |||||| | |||| Sbjct 43336614 GATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTG-TCGATGGTGTCTGAGCTTTCCA 43336556 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || ||||| |||| |||||| ||||| |||||||| Sbjct 43336555 CCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| ||||| | || ||||| | | | |||||||| ||||||||||| ||| Sbjct 43329173 GCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGC 43329114 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | | ||||||||| || || || | | | || || | |||||| |||||||| Sbjct 43329113 GAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGG 43329054 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| || ||| | |||| || | |||||| | |||| Sbjct 43329053 GATACCCTCCTTATCCTGGATCTTGGCTTTCACATTG-TCTATGGTGTCTGAGCTTTCCA 43328995 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || ||||| |||| |||||| ||||| |||||||| Sbjct 43328994 CCTCGAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || ||||| | | |||||||| || |||||||| || Sbjct 43337190 GCCACCACGAAGTCGCAACACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGC 43337131 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| ||||| || ||||| |||| | |||| || | ||| ||||| || || Sbjct 43337130 AAGGGTACGCCCATCCTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGCGG 43337071 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || ||||| | | || | || || | || | Sbjct 43337070 GATACCCTCCTTGTCT-TGAATCTTGGTTTTCACATTATCAATAGTATCTGAACTTTCAA 43337012 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| || || ||||||||||||||| Sbjct 43337011 CCTCCAAAGTTATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCATG 43336962 >seq6 Length=23791330 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 10734049 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCG 10733990 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 10733989 AAGATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 10733930 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | || | ||||||||| || || ||||| Sbjct 10733929 TTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTTATCGTTTTACCCGTTAGGGTTTTC 10733870 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 10733869 ACGAAGATCTGCAT 10733856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || ||| |||||||| || || |||| Sbjct 23717797 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGCCCATCCTCGAGCTGCTTCCCGGCG 23717856 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| ||||| || ||||| || || || ||||| ||||| ||| | || | || Sbjct 23717857 AAGATCAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTC-CTGAATCTTGGCCTTCAC 23717915 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| | ||||||||| | || | || ||||| |||||||| | Sbjct 23717916 ATTG-TCGATGGTGTCCGAACTCTCCACCTCCAGAGTTATGGTCTTACCGGTCAGAGTCT 23717974 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 23717975 TAACGAAGATTTGCAT 23717990 >seq8 Length=20383548 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| || || || |||| Sbjct 13445052 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCG 13445111 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 13445112 AATATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACG 13445171 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | || | ||||||||| || || ||||| Sbjct 13445172 TTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTTATCGTTTTACCCGTTAGGGTTTTC 13445231 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 13445232 ACGAAAATCTGCAT 13445245 >seq706 Length=122390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||||||||||||||| || | Sbjct 22791 CCACCGCGAAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 22850 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || ||||| || | | | || || | ||||||||| || || Sbjct 22851 AAGGTTCGGCCATCCTCAAGCTGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGG 22910 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| | || | |||| |||| || | |||||| | ||||| Sbjct 22911 ATGCCCTCTTTGTC-TTGAATCTTGGCTTTAACATTG-TCTATGGTGTCAGAGCTCTCCA 22968 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || ||||| || |||||||| ||||| Sbjct 22969 CCTCAAGGGTTATGGTCTTTCCTGTGAGAGTCTTAACAAAAATTTGCAT 23017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||| ||| | || ||| ||||| || || || || | | Sbjct 23052 GATTCCTTTTGGATGTTGTAATCGGCAAGGGTTCGCCCATCCTCAAGCTGCTTGCCAGCA 23111 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| ||||| || || || ||||| ||||| ||| | || | || | Sbjct 23112 AAAATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCT-TGAATCTTGGCCTTCAC 23170 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| |||| |||||| |||| || | || ||||||||||| || || Sbjct 23171 GTTATCTATGGTATCGGAACTCTCCACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTT 23230 Query 138600 TACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 23231 AACAAAGATTTGCAT 23245 >seq848 Length=99386 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| || |||| | ||||||||||||||||| ||||| Sbjct 56766 GCCACCACGGAGACGGAGAACCAAGTGTAGAGTGGACTCCTTTTGAATGTTATAGTCTGC 56707 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||||| ||||| || | | | || || | || ||||| || || Sbjct 56706 CAAAGTTCGGCCATCCTCGAGCTGTTTCCCAGCAAAAATGAGCCTTTGCTGGTCTGGTGG 56647 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||||||||| ||| | || | || | ||| || | |||||| | |||| Sbjct 56646 GATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACGTTG-TCAATGGTGTCAGAGCTCTCC 56589 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || || || || || || ||||| || ||||| Sbjct 56588 ACCTCAAGGGTGATTGTCTTTCCGGTTAGGGTCTTCACAAATATTTGCAT 56539 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| | ||| || || | | | ||||||||||| |||||||| || ||| Sbjct 63838 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCT 63779 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || | || | |||||||| ||||| || | | | || || | || ||||| || | Sbjct 63778 -AGGGTTCTGCCA-TCCTCGAGCTGTTTCCCAGCAAAAATAAGCCTTTGCTGGTCTGGTG 63721 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTC 138563 | || ||||||||||| ||| | || | ||| |||| || | |||||| | ||| Sbjct 63720 GGATGCCTTCTTTGTC-TTGAATCTTAGCCTTAACATTG-TCAATGGTGTCAGAGCTCTC 63663 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| | || | || ||||| || ||||| || || || || ||||| Sbjct 63662 CACCTCAAGGGTGATGGTCTTACCGGTGAGAGTCTTAACGAAGATTTGCAT 63612 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| ||| | ||||| ||||| || || || || | | Sbjct 56504 GACTCCTTTTGGATGTTGTAATCGGCGAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCA 56445 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 |||| ||||| || ||||| || || || ||||| ||||| ||| |||| | ||| Sbjct 56444 AAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC-TTGAATTTTGGCCTTAAC 56386 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||| || |||| || | |||||||| || || || | Sbjct 56385 ATTG-TCTATGGTATCTGAACTCTCTACTTCGAGAGTGATGGTTTTACCGGTGAGGGTCT 56327 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 56326 TAACGAAGATTTGCAT 56311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496035756961920