Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq848 114 1e-20 seq706 109 5e-19 seq6 102 7e-17 seq11 91.5 1e-13 seq2 87.8 2e-12 seq537 84.2 2e-11 >seq848 Length=99386 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | ||| | || ||||| || ||||||||||| || |||||| Sbjct 56540 ATTCCACCACGGAGACGGAGCACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCG 56481 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || || | || | ||||||||||| || Sbjct 56480 GCGAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGT 56421 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || ||||||||||| || | |||| ||| || ||| ||| Sbjct 56420 GGGATGCCTTCCTTGTCTTGAATTTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCT 56361 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||||| | ||||| ||||| || || || || || ||||||||| Sbjct 56360 ACTTCGAGAGTGATGGTTTTACCGGTGAGGGTCTTAACGAAGATTTGCATC 56310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTG 45196 || || || || ||||||||||| || ||||| ||| | |||| | ||| || | || Sbjct 63814 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCT-AGGGTTCTGCCATCCTCGAGCTG 63756 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | || | | ||||||||| || || ||||||||||| |||||||| || Sbjct 63755 TTTCCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATGCCTTCTTTGTCTTGAATCTT 63696 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | |||||| || ||| || || || || | || || ||||| Sbjct 63695 AGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTACCGGT 63636 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || || ||||||||| Sbjct 63635 GAGAGTCTTAACGAAGATTTGCATC 63611 >seq706 Length=122390 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | ||| | || || || |||||||||||||| || |||||| Sbjct 23016 ATTCCACCGCGGAGACGGAGCACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCG 23075 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || || || || | || | || |||||||| || Sbjct 23076 GCAAGGGTTCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCTGGT 23135 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || |||||||| || || | || | |||| ||| |||||| ||| Sbjct 23136 GGGATCCCTTCCTTGTCTTGAATCTTGGCCTTCA-CGTTATCTATGGTATCGGAACTCTC 23194 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||||| | || || || || || || || ||||| ||||||||| Sbjct 23195 CACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTAACAAAGATTTGCATC 23246 >seq6 Length=23791330 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || || ||||| ||||| || || ||| | Sbjct 10734082 CCGCCGCGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 10734023 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || ||||| ||| | || | || ||||||||||||||| Sbjct 10734022 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGA 10733963 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | |||||| |||||||| || Sbjct 10733962 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCAC 10733904 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || | || | |||||| || ||||| ||||| || || || ||||||| Sbjct 10733903 CTCCAAGGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCG 10733854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||| ||||| || || ||| Sbjct 23717761 ATGCCACCACGGAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 23717820 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || ||| | |||| ||||||||||| || Sbjct 23717821 GCGAGGGTCCGCCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGTTGCTGGTCTGGT 23717880 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || ||||| || || | || | |||||| ||| ||| Sbjct 23717881 GGGATCCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCCGAACTCTCC 23717940 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | || || ||||| ||||| || || || ||||||||| Sbjct 23717941 ACCTCCAGAGTTATGGTCTTACCGGTCAGAGTCTTAACGAAGATTTGCATC 23717991 >seq11 Length=48970052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||| |||||| | ||||| || || ||||| ||||| |||||||| Sbjct 43336964 ATGCCACCACGAAGCCGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTATAATCC 43336905 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | |||||||| || | || | || |||||||| || Sbjct 43336904 GCAAGGGTTCTTCCATCTTCAAGCTGTTTTCCAGCAAAGATAAGTCTCTGCTGGTCTGGT 43336845 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || ||||| || ||| | || | ||| || ||| ||| Sbjct 43336844 GGGATACCCTCCTTGTCCTGAATCTTGGCTTTTACATTATCAATGGTATCTGAACTCTCC 43336785 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||| || || | |||||| || ||||||||||| Sbjct 43336784 ACCTCCAAGGTGATAGTTTTTCCCGTCAAAGTTTTGACGAAAATTTGCAT 43336735 >seq2 Length=36921656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || ||||||||||| ||||| || || || Sbjct 32545435 ATGCCACCACGGAGACGGAGGACGAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA 32545494 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || ||||| ||| | || | |||||||||||||| Sbjct 32545495 GCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGG 32545554 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || |||| || | || | |||||| || || Sbjct 32545555 GGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTC 32545613 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || || || ||||||||| Sbjct 32545614 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCATC 32545665 >seq537 Length=160394 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 || ||||||| | |||||||||||| | ||| || |||||||||||||| || ||||||| Sbjct 154731 TTGTTCCTCCCCTGAGCCTCAACACCAAATGAAGTGTTGATTCCTTTTGTATGTTATAAT 154790 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | | || | ||| |||| || || || ||| | ||||| | |||||||| | Sbjct 154791 CAGCAAGAGTGCGACCATCTTCCAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCAG 154850 Query 45229 GCGGAATGCCTTCTTTATC 45247 | || || ||||| || || Sbjct 154851 GAGGGATACCTTCCTTGTC 154869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451796770138560