Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 109 7e-19 seq6 102 1e-16 seq59 95.1 1e-14 seq8 84.2 3e-11 seq7 84.2 3e-11 >seq2 Length=36921656 Score = 109 bits (120), Expect = 7e-19 Identities = 369/567 (65%), Gaps = 11/567 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| ||||| |||||||| || ||||| || || ||||| | || Sbjct 1442759 GTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGGCCAGGCATCAAGCC 1442700 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | ||||||||| | || || |||||||||||||| ||||| || || Sbjct 1442699 GCGCTTCTTGAGCCAGAAAATGGAGCAGAAGCTTCCAGAGAAGAAGATTCCCTCGACGCA 1442640 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | ||||| || |||||| ||| | || | ||| || || Sbjct 1442639 GGCGAAGGCGACGATGCGCTCAGCGAAGGAGTCGGA---GGAGTCGATCCAGCGCAGGGC 1442583 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| || | | || |||| ||| | ||| || | ||||| | | ||| Sbjct 1442582 CCATTGGGCCTTCTTGGCAACGCAGGGGATGGTTTCGATGGCGTGGAAGAGGTGGTGCTT 1442523 Query 127771 TTCTGATGGATCT-TTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 127829 || | ||| || |||||||| | || | ||| || | ||| ||||| Sbjct 1442522 CTC-GTCGGAGCTCTTGATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGGA--T 1442466 Query 127830 TTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 127887 ||| ||||| || | ||||||| | ||| || ||| | || | ||| | Sbjct 1442465 GTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACTTGGATCTCCTT 1442406 Query 127888 GGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAG 127947 || | || |||||| | || || || ||||| | ||||| || || || Sbjct 1442405 CATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCAAAGAAGGCGAG 1442346 Query 127948 GATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGATCCTT 128007 || | | | ||| | |||| ||| | |||| | ||||| | ||| |||| Sbjct 1442345 GACGTGGGTGACGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCCCAGTGGCGGAGGTCCTG 1442286 Query 128008 TGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATAGAGTTCCC 128066 ||||| || ||||||||||| ||||| | | || | || ||||| || | ||||| Sbjct 1442285 CGAGAGGTCGACCTCCTCCGCCGTCCAGAAAGAGGCTTCG-GCTTTCTTGTACATTTCCC 1442227 Query 128067 AGAGGTGGGGATACTTCAGGGGGAACA 128093 ||| ||||| |||| | ||||||| Sbjct 1442226 AGATTTGGGGGTACTGGATTGGGAACA 1442200 >seq6 Length=23791330 Score = 102 bits (112), Expect = 1e-16 Identities = 195/285 (68%), Gaps = 12/285 (4%) Strand=Plus/Plus Query 10564 AATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCA 10623 || || || ||| |||| || ||||| | |||| || || ||||||||||||||||| Sbjct 18589937 AACTACCGGGAAGCCTACGGCCTCTTCGCGTGCAATGGGATCCTCTTCAACCACGAGTCT 18589996 Query 10624 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA------CCGATGGTATCAAACAA 10677 |||||||| ||| | |||||||||| |||||||| ||| || || | Sbjct 18589997 CCCCGTCGCGGCGAGAATTTCGTGACTCGGAAGATCACGCGGGCCGTGGGCCGCATCAAG 18590056 Query 10678 ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 10737 |||| ||| | || || | || ||||||||||| | ||| ||||| ||| Sbjct 18590057 ATCG-GGC--TCCAAAGCAAGCTGTTT---TTGGGGAACCTTCAGGCCTCTAGGGATTGG 18590110 Query 10738 GGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGAC 10797 || ||| ||||||||| || ||||||||||| | || || || || || | || Sbjct 18590111 GGCTTCGCTGGGGACTATGTGGAGGCCATGTGGCTGATGCTGCAGCAGGAGAAGCCTGAT 18590170 Query 10798 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 || ||||| || || || | ||| | ||| |||| ||||||| Sbjct 18590171 GACTATGTTGTGGCCACTGAAGAGTCCCACACCGTGGAGGAGTTC 18590215 >seq59 Length=585201 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Plus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| | | ||||| ||||| || ||| | ||| || || || Sbjct 286596 ATCAAACCGGCCTGGTCTCAATAGGGCAGAATCAAGAATGTCAGCCCTGTTGGTTGCTGC 286655 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 ||||||| ||| || || | || || |||||||| || ||||| ||||| |||| Sbjct 286656 AATGACAATGATACCAGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 286715 Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGC---ATACCACCCGCACTGCGTTGCTTACCGAC 12880 ||| ||||| | |||||||||| | |||||| | | || || ||| || || Sbjct 286716 GGTCTGTTCTCTTTCATCATTCCCACCACCAATACCAGTCCCTCTTTGT--CTT-CCAAC 286772 Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA--AAG 12938 || |||||||| |||| || || || || || ||| || ||| |||| || Sbjct 286773 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTGAAC 286830 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | ||| || |||| ||||| ||||| ||||||||||| ||||| Sbjct 286831 AAATCACGGACTCGAGAAGCACCAACACCAACAAACATCTCAACAAA 286877 >seq8 Length=20383548 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/256 (68%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 ||||| || ||| | ||| || || || | ||||| ||| || || | || || Sbjct 11725105 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAACGACAATGATACCGGTATTACCCTCAAAT 11725046 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | Sbjct 11725045 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 11724989 Query 12855 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 ||| || | || | |||| | || || || |||||||| || | |||| || ||| Sbjct 11724988 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAAAATAATGCAC 11724929 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || |||| ||||| | ||| | Sbjct 11724928 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGGACTCGAGAAGCACCAATACCAA 11724871 Query 12970 CAAACATCTCCACAAA 12985 |||||||||| ||||| Sbjct 11724870 CAAACATCTCAACAAA 11724855 >seq7 Length=19579009 Score = 84.2 bits (92), Expect = 3e-11 Identities = 197/293 (67%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| || | || || || || || ||||| | ||||||||| | | Sbjct 16528150 AACCCATCCATCTCCGTGAGAAGCTGGTTAATAGTCTGTTCCCTCTCATCATTCCCA--C 16528093 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | ||||| | | ||| | || ||||||||||| || |||||||| || || | Sbjct 16528092 CTCCGAGGCCCGCCCCTCTCTGCCTCCCAACGGCGTCAATCTCATCAATGAAGACAATGC 16528033 Query 12910 ACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 ||||| || ||| | | | || || | ||| | ||| ||| ||||| || ||| Sbjct 16528032 ACGGTGCCTTGTTCTTCGCCTTC-TCGAACAAATCCCTCACCCTCGAAGCACCCACCCCC 16527974 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 || |||| |||||| || | | || | || || || || || || || ||| Sbjct 16527973 ACGAACAGCTCCACGAACTCCGACGCCGCGCACGAGAAAAACGGCACTCCGGCCTCCCCC 16527914 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAG 13081 || | || | || || || |||||||||||||| || |||| | ||||| Sbjct 16527913 GCCACCGCCCTCGCCAGCAGCGTCTTCCCCGTCCCCGGCGGCCCCACCAGAAG 16527861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613227011261760