Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq8 138 1e-27 seq2 118 1e-21 seq11 107 2e-18 seq706 95.1 1e-14 >seq6 Length=23791330 Score = 143 bits (158), Expect = 3e-29 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 10734047 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 10733988 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | ||| | || |||||||||| |||||| ||||| ||| Sbjct 10733987 GATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 10733929 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| |||| || || ||||| ||||| || ||||| | Sbjct 10733928 TGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTTATCGTTTTACCCGTTAGGGTTTTCA 10733869 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 10733868 CGAAGATCTGCAT 10733856 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 7/210 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || || ||| | || ||||||||||| |||||||| Sbjct 23717799 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGCCCATCCTCGAGCTGCTTCCCGGCGAA 23717858 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || |||||||| | || | | ||||||||| ||||| ||| | | Sbjct 23717859 GATCAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCCTTCACATT 23717918 Query 46522 CGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| ||||| |||| || ||||| || || ||||| || || Sbjct 23717919 GTCGATGGTGTC---CGAACTCTCCACCTCCAGAGTTATGGTCTTACCGGTCAGAGTCTT 23717975 Query 46579 AACAAAGATTTGCATTTTGCACAAACAACA 46608 ||| |||||||||| | | ||| |||| || Sbjct 23717976 AACGAAGATTTGCA-TCTACACCAACAGCA 23718004 >seq8 Length=20383548 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| || |||||||| |||||||| Sbjct 13445054 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAA 13445113 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||| | |||||||||||||| ||| | | |||||||||| |||||| ||||| ||| Sbjct 13445114 TATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 13445172 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| |||| || || ||||| ||||| || ||||| | Sbjct 13445173 TGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTTATCGTTTTACCCGTTAGGGTTTTCA 13445232 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 13445233 CGAAAATCTGCAT 13445245 >seq2 Length=36921656 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || |||||| ||||| || ||||| | || ||||| | Sbjct 32545221 ACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTATAGTCAGCGAGGGTGCGGCC 32545280 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||||||||| ||||| | ||||||||| | || | | ||||| Sbjct 32545281 GTCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTT 32545340 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| | || | ||| | | | |||||| ||| || || | |||| Sbjct 32545341 GTCCTGGATCTTAGTTTTCA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGA 32545399 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || || || ||||| ||||| ||||| Sbjct 32545400 TTGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 32545436 Score = 116 bits (128), Expect = 4e-21 Identities = 155/210 (74%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | || ||||| |||| ||||||||||| |||||||| Sbjct 32545474 TCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 32545533 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | | ||||||||| |||||| ||||| ||| Sbjct 32545534 ATGAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 32545592 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| ||| |||||| || | |||||||| ||||| || || || || Sbjct 32545593 GTCAATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 32545649 Query 46579 AACAAAGATTTGCATTTTGCACAAACAACA 46608 ||| |||||||||| | |||| | ||||| Sbjct 32545650 AACGAAGATTTGCA-TCTGCAGAGTCAACA 32545678 Score = 102 bits (112), Expect = 9e-17 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || ||||||||||||| || || | | | || || |||||||| || || || Sbjct 32544561 CTCCTTCTGAATATTGTAGTCGGCAAGGGTCCTCCCATCCTCCAGCTGCTTCCCTGCAAA 32544620 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||||||| ||| ||| ||| | | Sbjct 32544621 GATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATTTTCGCCTTCACATT 32544680 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| |||| || ||||| || ||||| || ||||| Sbjct 32544681 GTCAATGGTGTCCGAGCTC---TCCACCTCCAAGGTAATGGTCTTACCCGTGAGAGTTTT 32544737 Query 46579 AACAAAGATTTGCATT 46594 ||| || || |||||| Sbjct 32544738 AACGAAAATCTGCATT 32544753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||| | || || | | || ||||||||||| |||||||| Sbjct 32545017 CTCCTTCTGGATGTTATAGTCCGCAAGGGTCCTTCCATCCTCGAGCTGCTTACCGGCGAA 32545076 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||||| |||||| ||| | | Sbjct 32545077 GATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 32545136 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| ||| || || | |||||||| || || || || || || Sbjct 32545137 ATCAATGGTGTCCGAGCT---TTCGACCTCGAGGGTGATGGTCTTTCCTGTAAGGGTCTT 32545193 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 32545194 CACGAAGATCTGCAT 32545208 >seq11 Length=48970052 Score = 107 bits (118), Expect = 2e-18 Identities = 166/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||||||||| | ||||| ||| | || |||||| || || ||||| |||| Sbjct 43336735 TGCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGG 43336676 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | | |||| |||||||||||||| || || |||| | ||| || || | | Sbjct 43336675 CGAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAG 43336616 Query 46485 GCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTC---GCTCGA 46539 | | | ||| |||||| |||||| ||| | |||| | ||||| ||| Sbjct 43336615 GGATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTGTCG--ATGGTGTCTGAGCT--- 43336561 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || | |||||||| || || |||| ||||| |||||||| ||||| Sbjct 43336560 TTCCACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 104 bits (114), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||||||||| | ||||| ||| | || |||||| || || ||||| |||| Sbjct 43329174 TGCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGG 43329115 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | | |||| |||||||||||||| || || |||| | ||| || || | | Sbjct 43329114 CGAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAG 43329055 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | |||||| ||| |||||| || | | | | ||||| ||| || Sbjct 43329054 GGATACCCTCCTTATCCTGGATCTTGGCTTTCACATTGTCTATGGTGTCTGAGCT---TT 43328998 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || | |||||||| || || |||| ||||| |||||||| ||||| Sbjct 43328997 CCACCTCGAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||| ||| | || ||||| |||||||||||||| | || || ||| | Sbjct 43329844 CGCAACACCAAATGTAGAGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTACGCCCA 43329785 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || || || || | | |||||| || | || | | ||||| Sbjct 43329784 TCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGAATACCTTCCTTA 43329725 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| ||| | | | | ||||| ||| || |||| || ||| Sbjct 43329724 TCCTGAATCTTAGCCTTCACATTATCTATAGTGTCAGAACTTTCAACCTCCAAAGTAATG 43329665 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||||||| || || ||||| |||||||| Sbjct 43329664 GTCTTTCCCGTCAGAGTCTTCACAAATATTTGCAT 43329630 >seq706 Length=122390 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||| |||| || || ||| | || || ||||||||||| || || Sbjct 23055 TCCTTTTGGATGTTGTAATCGGCAAGGGTTCGCCCATCCTCAAGCTGCTTGCCAGCAAAA 23114 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | | |||||||| ||||| ||| | | Sbjct 23115 ATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCCTTCACGTTA 23174 Query 46523 GCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | || ||| ||| ||||| || | |||||||| || || ||||| || ||| Sbjct 23175 TCTATGGTATCGGAACTC---TCCACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTA 23231 Query 46580 ACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 23232 ACAAAGATTTGCAT 23245 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| | |||| || | ||| |||||| || ||||||||||| | | Sbjct 22563 CCTCCCCTCAGACGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCTGCT 22622 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || |||||||| || || || ||||| | |||||||| | || Sbjct 22623 AGAGTTCTTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGTGGG 22682 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||||||| |||||| ||||| | | | ||||| ||| || Sbjct 22683 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATTGTGTCTGAACTC---TCA 22739 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| || || || || || ||||| || || ||||| Sbjct 22740 ACCTCAAGGGTGATGGTCTTTCCTGTTAGGGTCTTAACGAAAATCTGCAT 22789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564980255622720