Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-21 seq848 89.7 4e-13 >seq11 Length=48970052 Score = 116 bits (128), Expect = 3e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||| || ||| ||||| || ||||| ||||| || Sbjct 43330085 GCCACCACGAAGACGAAGAACAAGATGTAAGGTGGACTCTTTCTGAATATTGTAATCAGC 43330026 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| |||||||| ||||| ||||||| | | |||||| |||| ||| Sbjct 43330025 CAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGGGG 43329966 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG--TTTAATC-GTCGCTACTGTGTCTGCGCTTTC 39668 | |||||| ||||| | | | |||| || | | ||| || || || | |||||| Sbjct 43329965 AATGCCTTCCTTGTC-CTGAATCTTTGCCTTCACACTGTCAATA--GTATCAGAGCTTTC 43329909 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| ||||| ||||| || || || ||||||||||| || || || ||||| Sbjct 43329908 CACCTCCAAGGTAATGGTCTTCCCTGTTAAAGTTTTCACAAATATTTGCAT 43329858 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| ||||| || |||||||| | ||| || || || || || |||||||| Sbjct 43336734 GCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGC 43336675 Query 39552 CAAAACGCGTTCATC-GTCC---AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | | |||| | |||| | || || || ||||||| | | ||| ||||||| Sbjct 43336674 GA----GGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCG 43336619 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCT 39665 || | || |||||||| || || ||| | | |||| | ||||||| ||| Sbjct 43336618 GAGGGATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTGTCGATG--GTGTCTGAGCT 43336561 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || | || || || ||||| || |||||||| || ||||||||||| Sbjct 43336560 TTCCACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 >seq848 Length=99386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || || || || || || | | | | |||| |||||||| ||||| |||| Sbjct 57186 TTCTTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAA 57127 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCG 39646 ||| || | |||||| || | || | || || ||||| | | ||||||| || | Sbjct 57126 AATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC-CTGAATTTTTGTCTTCACAT 57068 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | | | ||||||| ||||| || |||| ||||| || || || || ||||| |||| Sbjct 57067 TATCGATGGTGTCTGAACTTTCAACCTCCAGGGTAATAGTCTTTCCAGTCAAAGTCTTTA 57008 Query 39707 CGAAGATCTGCAT 39719 | ||||||||||| Sbjct 57007 CAAAGATCTGCAT 56995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || ||||| || | | | | |||| |||||||| ||||| |||| Sbjct 64258 TCTTTCTGAATGTTGTAATCAGCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAG 64199 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || || | || || || | || | || || ||||| |||||| ||| | | | Sbjct 64198 ATCAACCTTTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATTTTTGCTTTGACATTG 64139 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || ||||||| ||||| || ||||| ||||| || || || || ||||| || | Sbjct 64138 TCAATA--GTGTCTGAACTTTCAACCTCCAAGGTAATAGTCTTTCCAGTCAAAGTCTTGA 64081 Query 39707 CGAAGATCTGCATG 39720 | |||||||||||| Sbjct 64080 CAAAGATCTGCATG 64067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347214922396088