Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq59 131 2e-25 seq8 127 2e-24 seq7 111 2e-19 seq2 111 2e-19 seq3 104 3e-17 seq5 84.2 3e-11 >seq59 Length=585201 Score = 131 bits (144), Expect = 2e-25 Identities = 249/364 (68%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | | || || |||||| || ||| | | || || || || Sbjct 286596 ATCAAACCGGCCTGGTCTCAATAGGGCAGAATCAAGAATGTCAGCCCTGTTGGTTGCTGC 286655 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 ||||||| ||||| || | | ||||| |||||||| ||||||||||||||||| | Sbjct 286656 AATGACAATGATACCAGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 286715 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 || ||||| | |||||||||| | | ||||| | | ||| |||| || || Sbjct 286716 GGTCTGTTCTCTTTCATCATTCCCACCACCAATACCAGTCCCTCTTTGTCTTCCAACAGC 286775 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| ||||||| |||||||| || || ||| || ||| | | || | ||| Sbjct 286776 ATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGCCTTCTTGAACAAATC 286835 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9493 || || | || || ||||||||||||||||| ||||| | | | | | || | Sbjct 286836 ACGGACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTG-ATATCG 286894 Query 9494 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9552 || || || ||| || |||||| ||||| || || | ||| ||||| || || | Sbjct 286895 AGAAAAATGGAACACCAGCTTCACCAGCAATAGCCTTAGCTAAAAGGGTCTTCCCAGTTC 286954 Query 9553 CTGG 9556 |||| Sbjct 286955 CTGG 286958 >seq8 Length=20383548 Score = 127 bits (140), Expect = 2e-24 Identities = 283/421 (67%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || ||| | | || || || || | ||||| ||||| || | | ||||| Sbjct 11725106 ATCAAGAATGTCAGCCCTGTTAGTAGCTGCAACGACAATGATACCGGTATTACCCTCAAA 11725047 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||| ||||||||||||||||| | || ||||| | |||||||||| || Sbjct 11725046 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT---CC 11724990 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| || | |||| |||| || |||||||| ||||| | || | ||| || Sbjct 11724989 ACCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAAAATAATGCA 11724930 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| | | || | ||| || || | || || | |||||| Sbjct 11724929 CGGAGCATTCTCTTTGGCCTTCTTGAATAAATCACGGACTCGAGAAGCACCAATACCAAC 11724870 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | |||| || || |||||| | |||||| | Sbjct 11724869 AAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACCTG 11724811 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||| || || | ||| ||||| || || || || ||| | || || |||| Sbjct 11724810 CAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACCTT 11724751 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 ||| || || ||| || ||| |||||||| | ||| ||||| ||||| | || Sbjct 11724750 TTGGTATACGTGCCCCAACAGCAGTGTACCTCTCAGGCTTCTTTAGAAACTCCACCACCT 11724691 Query 9640 C 9640 | Sbjct 11724690 C 11724690 >seq7 Length=19579009 Score = 111 bits (122), Expect = 2e-19 Identities = 249/369 (67%), Gaps = 14/369 (4%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| || | ||| ||||||||||| ||||||| ||||||||| | Sbjct 16528151 AAACCCATCCATCTCCGTGAGAAGCTGGTTAATAGTCTGTTCCCTCTCATCATTCCC--A 16528094 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | ||| | || ||||| ||||||||||||||||||||||| Sbjct 16528093 CCTCCGAGGCCCGCCCCTCTCTGCCTCCCAACGGCGTCAATCTCATCAATGAAGACAATG 16528034 Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 || || ||| | ||| || | || || | ||| | ||||| || ||||| Sbjct 16528033 CACGGTGCCTTGTTCTTC----GCCTTCTCGAACAAATCCCTCACCCTCGAAGCACCCAC 16527978 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 || || |||| |||||| || | | || | || || || || || | || Sbjct 16527977 CCCCACGAACAGCTCCACGAACTCCGACGCCGCGCACGAGAAAAACGGCACTCCGGCCTC 16527918 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||||| | || | || || || ||||| ||||| || ||| ||| | | || | | Sbjct 16527917 CCCCGCCACCGCCCTCGCCAGCAGCGTCTTCCCCGTCCCCGGCGGCCCCACCA-GAAGAC 16527859 Query 9575 ACCCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCA 9633 ||||| | |||||||| ||||| || ||| | || || | ||| | |||||| | Sbjct 16527858 ACCCCTTCGGAATCTTTGCGCCCAAGGCAGTGTACTTATCGGGATTCTTCAAAAAATCAA 16527799 Query 9634 CAATCTCTT 9642 ||| ||||| Sbjct 16527798 CAACCTCTT 16527790 >seq2 Length=36921656 Score = 111 bits (122), Expect = 2e-19 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || |||||||| ||||| || ||||| ||||| ||||| | || Sbjct 1442759 GTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGGCCAGGCATCAAGCC 1442700 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| |||| | |||||| || ||||||||||| ||||| || || Sbjct 1442699 GCGCTTCTTGAGCCAGAAAATGGAGCAGAAGCTTCCAGAGAAGAAGATTCCCTCGACGCA 1442640 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || || || | | |||||| ||||||||| || | ||| | ||| || || Sbjct 1442639 GGCGAAGGCGACGATGCGCTCAGCGAAGGAGTCGGA---GGAGTCGATCCAGCGCAGGGC 1442583 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||||| |||||||| ||| || || | |||| |||||| Sbjct 1442582 CCATTGGGCCTTCTTGGCAACGCAGGGGATGGTTTCGATGGC 1442541 >seq3 Length=29476785 Score = 104 bits (114), Expect = 3e-17 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || || ||||| || |||||||| || ||||| | ||| || ||||| | |||| Sbjct 2833252 TGAGGCCTAGGTGTTCCGGCATTGAAAAGAGTTGGAGATGCATGGGTGAACCATCTTTGG 2833311 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| ||| || | | |||||||| ||||| ||| ||| || || | || Sbjct 2833312 GACATCATGTGGTAAGTTTTGACAACAGAATCTATGTCATCCTTGTGAATTCCAACAGCG 2833371 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| ||||||| || || |||||| | | |||| | | || |||| | Sbjct 2833372 ACCCTCATCAACATGTGCTGAGGCCTTTCCACAACCTTTCCATTAACC--TTCAAGAGGT 2833429 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | | ||||||||||||||| ||||| ||| || | ||| |||||| Sbjct 2833430 ACGACCTCTCAAGGGTTTTGAACCCAAAATAATCATAGTCAAAGTCCC 2833477 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| ||| || || |||||||||| |||||| ||||| || ||| | | | Sbjct 2831893 ACATATCGTGGTAGTGCAATTGATGCCAGATTGCACACAGCAGTTTCAGCTGGACTGGAA 2831952 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||||| ||||||||||| || ||||| || |||||||||| |||||| Sbjct 2831953 TACTCGATTATTTCGGTACACAAGTTTGATGATTTAATTGTACCCAAATTCTGTTGGTTG 2832012 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||| | ||||| Sbjct 2832013 CTTTTTCTATTGCAAGAATCCT 2832034 >seq5 Length=5133333 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || || ||||| || |||||||| | || |||| ||| ||| ||||| | || Sbjct 4458420 CTGAGGCCTAGGTGTTCCTGCATTGAAAATAGTGGGTGATGCATGAGTGAACCATCTCTG 4458479 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | || || | | ||||||||||||| ||| ||| || || | || Sbjct 4458480 AGACATCAAATGATAAGTTTTGACAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGC 4458539 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||||| || || |||||| | | || | || || | | | || Sbjct 4458540 AACCCTCATCAACATGTGCTGAGGCCTTTCCACAACCTTTCC-TTGAACCTTCAACAAAT 4458598 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || | |||| | |||||||| |||||||||| || | ||| |||||| Sbjct 4458599 AGGACCTCTCCAAGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCC 4458646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589711355768640