Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 105 8e-18 seq3 100 3e-16 seq11 93.3 5e-14 seq228 87.8 2e-12 >seq5 Length=5133333 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || | || | | |||||||||||||||| Sbjct 4457651 CCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGGACAATACCA 4457710 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || ||| ||||| ||| | || | || | | ||| ||| Sbjct 4457711 TTTGATGTCCCATTTGTGCCACGAATGTAACTGCCAGTGGCACGAATGTCATGAATAGAA 4457770 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || ||||| ||| |||| ||||||| || | || ||||| ||| Sbjct 4457771 ACACCAATTCCTCCTGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 4457830 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || ||||| ||||||| | |||| Sbjct 4457831 CCCTCTATGCTATCATTTTTCAT 4457853 >seq3 Length=29476785 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| || | || | |||||||| |||| |||| Sbjct 2832868 CCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGCAACATTGGAACAACACCA 2832927 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||||||||||||| | || | ||| || || || Sbjct 2832928 TTGGAAGTCCCATTTGTACCACGAATATAACTTCCAGTGGCACGTATGTTGTGAACAGAG 2832987 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | || ||||| || Sbjct 2832988 ACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATATC 2833047 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || ||||||||||||||| |||| Sbjct 2833048 CCCTCTATACTATCATCTTTCAT 2833070 >seq11 Length=48970052 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||||||||| || || ||||| |||||| || || ||||| || ||||| || Sbjct 47447301 ACAAGCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATTAACTCATTTGAGAATGTCAA 47447242 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 ||| ||||||| |||||| ||||| | ||||||||| Sbjct 47447241 ACCTGGCATCAATCCTCTCTTTTTAAGCCAGAATAT 47447206 >seq228 Length=323604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/225 (70%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||||||||| || || |||| ||||| || | ||| || || || || Sbjct 89094 ACAAGCAAAATCACAGTGAAGGCCCTTAACTCTAGAGATTAGCCTATTTGAGAACGTCAA 89035 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATG-ATCCAGAAAAGA 19078 || | |||||||||||| ||||| | | ||||||| | | ||| | |||| | || | Sbjct 89034 ACGA--CATCAGTCCTCTCTTTTTAAGCTAGAATATGGCACAAAAAGCATCCTAAGAAAA 88977 Query 19079 ATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTAT 19138 |||| |||| || || |||| |||| || |||||| | || || | | ||| Sbjct 88976 ATATCCCTTAAACACATGAAAAATCAACAAG--TTTCTCTACAA--AGAAATGGAACTAT 88921 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA 19183 ||||||| ||| |||||| ||| ||||| || ||||| |||| Sbjct 88920 GAATCCAACTCAATGCCCATTCAACCTTCCTTGCAACACAAGGCA 88876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561852084911040