Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq2 111 2e-19 seq7 95.1 1e-14 seq5 93.3 5e-14 seq59 91.5 2e-13 >seq3 Length=29476785 Score = 118 bits (130), Expect = 1e-21 Identities = 164/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||| | || ||| ||||| ||||||||||||||| | || |||| || Sbjct 2833477 GGGACTTTGACTATGATTATTTTGGGTTCAAAACCCTTGAGAGGTCGTACCTCTTGAA-- 2833420 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | | |||| | | |||||| || ||| ||||||| ||| ||||||| | || || Sbjct 2833419 GGTTAATGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTCGCTGTTGGAAT 2833360 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| ||||| |||||||| | | || ||| ||| |||||||||| | ||| Sbjct 2833359 TCACAAGGATGACATAGATTCTGTTGTCAAAACTTACCACATGATGTCCCAAAGATGGTT 2833300 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || ||| | ||||| || |||||||| || ||||| || || || Sbjct 2833299 CACCCATGCATCTCCAACTCTTTTCAATGCCGGAACACCTAGGCCTCA 2833252 >seq2 Length=36921656 Score = 111 bits (122), Expect = 2e-19 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| |||| | || || ||| |||||||| ||||||| || ||| | ||| Sbjct 1442541 GCCATCGAAACCATCCCCTGCGTTGCCAAGAAGGCCCAATGGGCCCTGCGCTGGATCGAC 1442600 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | || ||||||||| |||||| | | || || || || || ||||| |||||| Sbjct 1442601 TCC---TCCGACTCCTTCGCTGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGAATCTTC 1442657 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 ||||| || |||||| | |||| ||| | |||||||| || | ||||| ||||| Sbjct 1442658 TTCTCTGGAAGCTTCTGCTCCATTTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGCCTC 1442717 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || ||||| |||||||| || ||||| || ||| Sbjct 1442718 ACTTTCTCCAACGAACTCATTTCCCGCGACGAGGGGCTTCAC 1442759 >seq7 Length=19579009 Score = 95.1 bits (104), Expect = 1e-14 Identities = 263/401 (66%), Gaps = 2/401 (0%) Strand=Plus/Plus Query 175229 AAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCC 175288 |||||||||| || || | ||| ||| |||| | || || ||| || || |||| Sbjct 15234904 AAGAGATTGTTGAGTTCTTGAAGACACCAGAGAAGTTTTCTGCTGTTGGAGCAAAAATCC 15234963 Query 175289 CCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCA 175348 || ||| | ||| | | || ||||| || |||||||| | || ||| || | Sbjct 15234964 CCAAAGGGGTTCTTTTGGTAGGGCCACCAGGGACTGGAAAGACATTGCTGGCCAAGGCAA 15235023 Query 175349 TCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 | || || || | || || ||| || |||| || | || | ||||||| Sbjct 15235024 TTGCTGGAGAGGCTGGCGTTCCTTTCTTCTCTCTATCTGGATCAGAGTTCATTGAGATGT 15235083 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||| ||||| || ||| |||||| | ||| | ||| | | ||| |||| || Sbjct 15235084 TTGTGGGTGTAGGGGCCTCAAGGGTGAGGGATTTGTTTAACAAGGCCAAACAAAACTCAC 15235143 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA 175528 | ||| | | |||||||||||||| ||||| || || | ||| | | | ||| || Sbjct 15235144 CTTGTTTGATATTCATTGATGAGATAGATGCTGTAGGGAGGCAGAGAGGTACAGGT-ATA 15235202 Query 175529 TG-CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 | || |||||| || || || |||||| | ||||| | ||||| || |||||||| Sbjct 15235203 GGTGGAGGAAATGATGAAAGGGAGCAAACACTGAATCAGTTGCTCACTGAAATGGATGGT 15235262 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 ||| | | ||||| || | || ||||| |||||||| Sbjct 15235263 TTTACTGAAAACACTGGGGTTATAGTCATTGCTGCCACTAA 15235303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 248/376 (66%), Gaps = 12/376 (3%) Strand=Plus/Plus Query 175221 TGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGC 175280 ||| || ||||| |||| |||||| | ||| | ||||| | || || || || Sbjct 16527782 TGAGCTCCAAGAGGTTGTTGATTTTTTGAAGAATCCCGATAAGTACACTGCCTTGGGCGC 16527841 Query 175281 CAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGC 175340 ||||| || || ||||| | ||| ||| || ||||| ||||| || || || Sbjct 16527842 AAAGATTCCGAAGGGGTGTCTTCTGGTGGGGCCGCCGGGGACGGGGAAGACGCTGCTGGC 16527901 Query 175341 CCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGT 175400 | || | ||||| || | || || || || |||| | || | | || || Sbjct 16527902 GAGGGCGGTGGCGGGGGAGGCCGGAGTGCCGTTTTTCTCGTGCGCGGCGTCGGAGTTCGT 16527961 Query 175401 GGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGA 175460 |||| |||| || || |||||||| ||||| | ||| | || || | || || Sbjct 16527962 GGAGCTGTTCGTGGGGGTGGGTGCTTCGAGGGTGAGGGATTTGTTCGAGAAGGC----GA 16528017 Query 175461 AAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCA 175516 | | ||| || || ||||||||||||||||||||||| || || || | ||| | Sbjct 16528018 AGAACAAGGCACCGTGCATTGTCTTCATTGATGAGATTGACGCCGTTGGGAGGCAGAGAG 16528077 Query 175517 GCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | || || | | | | | ||||| ||||| ||||| || ||||| || || ||||| Sbjct 16528078 GGGCGGGCCTCGGAGGTGGG--AATGATGAGAGGGAACAGACTATTAACCAGCTTCTCAC 16528135 Query 175575 CGAGATGGATGGCTTT 175590 ||||||||||| ||| Sbjct 16528136 GGAGATGGATGGGTTT 16528151 >seq5 Length=5133333 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGG 75187 |||||| ||| | || |||||||||| |||||||| | |||| | |||| | | | || Sbjct 4458646 GGGACTTTGACTATGATTACTTTGGTTTCAAAACCTTGGAGAGGTCCTATTTGTTGAAGG 4458587 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | || | | |||||| || ||| ||||||| ||| |||| || | || || Sbjct 4458586 TTCAA-GGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATT 4458528 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| ||| ||||||||||||| | | || || | |||||| || | |||| Sbjct 4458527 CACAAGGATGACATTGATTCTGCTGTCAAAACTTATCATTTGATGTCTCAGAGATGGTTC 4458468 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | ||| ||| |||| || | |||||||| || ||||| || || ||| Sbjct 4458467 ACTCATGCATCACCCACTATTTTCAATGCAGGAACACCTAGGCCTCAG 4458420 >seq59 Length=585201 Score = 91.5 bits (100), Expect = 2e-13 Identities = 238/363 (66%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || |||||||| | || || || || |||||| | ||| ||||| Sbjct 286958 CCAGGAACTGGGAAGACCCTTTTAGCTAAGGCTATTGCTGGTGAAGCTGGTGTTCCATTT 286899 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | || | | | ||||| ||||||||||||||||| ||||| | || Sbjct 286898 TTCTCGATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTC 286839 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||| | || | | ||| || ||| || || |||||||| ||||||| ||| Sbjct 286838 CGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCCCTTGCATTGTCTTTGTTGATGAAATT 286779 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | ||| | | ||||| | | ||||| || |||||||| Sbjct 286778 GATGCTGTTGGAAGACAAAGAGGGACTGGTATTGGTGGTGGGAATGATGAAAGAGAACAG 286719 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTT 175614 || | || ||||| | || || |||||||| ||||| | | ||||| || | || Sbjct 286718 ACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAATACTGGTATCATTGTC 286659 Query 175615 ATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTT 175674 ||||| || || || | | || || |||||| ||||| | | || || || ||| Sbjct 286658 ATTGCAGCAACCAACAGGGCTGACATTCTTGATTCTGCCCTATTGAGACCAGGCCGGTTT 286599 Query 175675 GAT 175677 ||| Sbjct 286598 GAT 286596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596297146663680