Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq11 109 1e-18 seq848 95.1 2e-14 >seq11 Length=48970052 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| || || | || || |||||||||||| | || || | | | Sbjct 43337633 CGAAGCACAAGATGTAAAGTGGATTCCTTCTGAATATTATAGTCCGCCAAGGTACGACCA 43337574 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || || |||||||| | ||||| ||||| || || || || || || Sbjct 43337573 TCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTG 43337514 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | ||| ||||||||| || || || || | || || Sbjct 43337513 TCCTGAATCTTTGCTTTAACATTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATG 43337454 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || ||||| |||||||||||||| Sbjct 43337453 GTCTTCCCTGTCAGAGTTTTCACAAATATTTGCAT 43337419 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| || || | |||||| |||||| || || | || || | | | Sbjct 43330072 CGAAGAACAAGATGTAAGGTGGACTCTTTCTGAATATTGTAATCAGCCAAGGTACGACCA 43330013 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || || |||||||| | ||||| || || || || || ||||| || Sbjct 43330012 TCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTG 43329953 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | | | ||||||||| || || || || | || || Sbjct 43329952 TCCTGAATCTTTGCCTTCACACTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATG 43329893 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||||| ||||| |||||||||||||| Sbjct 43329892 GTCTTCCCTGTTAAAGTTTTCACAAATATTTGCAT 43329858 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||| || || || |||| ||| | || | ||| || ||| || Sbjct 43329182 AATTTGCATGCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTT 43329123 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| | ||||| || || | || || || |||||||| | |||||||| Sbjct 43329122 GTAATCGGCGAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTG 43329063 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || || ||||| || || |||| ||| | ||| || || || || Sbjct 43329062 ATCCGGAGGGATACCCTCCTTATCCTGGATCTTGGCTTTCACATTGTCTATGGTGTCTGA 43329003 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || | ||||| ||||| || ||||| Sbjct 43329002 GCTTTCCACCTCGAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||| || || || |||| ||| | || | ||| || ||| || Sbjct 43336743 AATTTGCATGCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTT 43336684 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| | ||||| || || | || || || |||||||| | |||||||| Sbjct 43336683 GTAATCGGCGAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTG 43336624 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || ||||| || || || |||| ||| | ||| || || || || Sbjct 43336623 ATCCGGAGGGATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGA 43336564 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || | ||||| ||||| || ||||| Sbjct 43336563 GCTTTCCACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 >seq848 Length=99386 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| ||||| ||||| || || || | || | ||| || ||| || ||||| Sbjct 64069 ATGCCACCCCTCAAACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCT 64010 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||||| || |||||||| | |||||||| || || Sbjct 64009 GCAAGTGTGCGTCCATCCTCAAGCTGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGT 63950 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| || || | || | ||| || || || || |||| Sbjct 63949 GGGATACCCTCTTTGTCTTGAATCTTAGCCTTGACATTATCTATGGTGTCTGAGCTCTCA 63890 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || || |||||||||||||| Sbjct 63889 ACTTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTAACAAATATTTGCAT 63840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899243527835520