Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq848 105 1e-17 seq11 89.7 8e-13 >seq848 Length=99386 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| |||||||| || || || ||| ||| Sbjct 64068 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACCTTGGAGGTTGAAAGTTCA 64127 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| ||||| ||||| || || || || || ||||| ||| Sbjct 64128 GACACTATTGACAATGTCAAAGCAAAAATCCAAGACAAGGAGGGAATTCCACCAGACCAA 64187 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||| | ||| || ||||| | || ||| || ||| | | ||||| || Sbjct 64188 CAAAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGATTACAAC 64247 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 64248 ATTCAGAAAGAGTCTACTCTTCA 64270 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || || | || ||||| || || || | || || || || Sbjct 56538 AATGCAAATATTTGTGAAGACCCTAACCGGAAAGACAATCACCCTTGAGGTGGAGAGCTC 56597 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| || ||| || || || ||||||||||| || ||||| || Sbjct 56598 TGACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAAGAAGGCATCCCACCAGACCA 56657 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| | |||| ||| || || |||||||| ||| | ||||||| |||| ||||| Sbjct 56658 GCAAAGGCTCATTTTTGCTGGGAAACAGCTCGAGGATGGCCGAACTTTGGCAGACTATAA 56717 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || || || || || Sbjct 56718 CAT-TCAAAAGGAGTCCACTCTACACTTGGT 56747 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||||||| |||||||| || || || ||| ||| Sbjct 57451 ATGCAGATATTTGTCAAGACTTTGACTGGAAAGACTATTACCTTGGAGGTTGAAAGTTCA 57510 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| ||||| || || || || || ||||| || Sbjct 57511 GACACGATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 57570 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||| | || ||| || ||| | | ||||| || Sbjct 57571 CAGAGGTTGATCTTTGCTGGGAAGCAATTAGAGGATGGAAGGACTCTTGCTGATTACAAC 57630 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 57631 ATTCAGAAAGAGTCTACTCTTCA 57653 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || | || || || || || || | || || || ||| Sbjct 63612 ATGCAAATCTTCGTTAAGACTCTCACCGGTAAGACCATCACCCTTGAGGTGGAGAGCTCT 63671 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||| ||||||||||| || ||||| || Sbjct 63672 GACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAAGAAGGCATCCCACCAGACCAG 63731 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || || |||||||| ||| |||||| || | ||||| | Sbjct 63732 CAAAGGCTTATTTTTGCTGGGAAACAGCTCGAGGATGGCAGAACCCTAGCTGATTACA-- 63789 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || ||||| || || Sbjct 63790 ACATCCAAAAGGAGTCCACCCTTCACTTGGT 63820 >seq11 Length=48970052 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || || || || || | || || ||| || Sbjct 43328946 ATGCAGATCTTTGTGAAAACTTTGACCGGTAAGACCATCACCCTCGAGGTGGAAAGCTCA 43329005 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| || || || ||||| || || || ||||| || ||| Sbjct 43329006 GACACCATAGACAATGTGAAAGCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAA 43329065 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| ||| || ||||||||||| || ||||| | | ||||| || Sbjct 43329066 CAGAGGCTGATTTTTGCTGGCAAGCAGCTCGAGGACGGGAGAACCCTCGCCGATTACAAC 43329125 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| | || || ||||| ||| || | |||||||| || Sbjct 43329126 ATTCAGAAGGAGTCCACCCTCCATTTGGTGCTACGTTTAAGAGGTGG 43329172 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || || || || || | || || ||| || Sbjct 43336507 ATGCAGATCTTTGTGAAAACTTTGACCGGTAAGACCATCACCCTTGAGGTGGAAAGCTCA 43336566 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| || || || || ||||| || || ||||| || ||| Sbjct 43336567 GACACCATCGACAATGTGAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAA 43336626 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| ||| || ||||||||||| || ||||| | | ||||| || Sbjct 43336627 CAGAGGCTGATTTTTGCTGGCAAGCAGCTCGAGGACGGGAGAACCCTCGCCGATTACAAC 43336686 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| | || || ||||| ||| || | |||||||| || Sbjct 43336687 ATTCAGAAGGAGTCCACCCTCCATTTGGTGCTACGTTTAAGAGGTGG 43336733 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| ||||||||||| || || || || || ||| Sbjct 43336735 ATGCAAATTTTCGTCAAAACTTTGACGGGAAAAACTATCACCTTGGAGGTGGAGAGTTCA 43336794 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || || || || || || || || ||||| || Sbjct 43336795 GATACCATTGATAATGTAAAAGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 43336854 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || || ||||| |||||| ||||| | | |||||||| Sbjct 43336855 CAGAGACTTATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTATAAC 43336914 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || || || || ||||| Sbjct 43336915 ATCCAGAAGGAGTCCACCCTGCACTTGGTGTT 43336946 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| || || || || || || ||| ||| Sbjct 43336963 ATGCAGATTTTTGTGAAGACCTTGACTGGAAAGACCATAACTTTGGAGGTTGAAAGTTCA 43337022 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||||| || || ||||| || || || || || ||||| || Sbjct 43337023 GATACTATTGATAATGTGAAAACCAAGATTCAAGACAAGGAGGGTATCCCGCCAGACCAG 43337082 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||| || ||||| || ||| | || | | ||||| || Sbjct 43337083 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAGGATGGGCGTACCCTTGCGGATTACAAC 43337142 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || || ||||| ||||| Sbjct 43337143 ATCCAGAAGGAGTCCACTCTGCATTTGGTGTT 43337174 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || |||| ||||| || ||||| || || || ||| |||| Sbjct 43329630 ATGCAAATATTTGTGAAGACTCTGACGGGAAAGACCATTACTTTGGAGGTTGAAAGTTCT 43329689 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| ||| || || ||||| ||||| || || || || || Sbjct 43329690 GACACTATAGATAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATTCCACCGGATCAG 43329749 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||| || |||||||| |||||| Sbjct 43329750 CAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGAT 43329785 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| |||| || || || ||||| || || || ||| ||| Sbjct 43337419 ATGCAAATATTTGTGAAAACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 43337478 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| || || || || || || ||||| || ||||| || Sbjct 43337479 GATACTATTGACAATGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAG 43337538 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || ||||| | |||||| | || || | || |||||| Sbjct 43337539 CAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCGGACTATAAT 43337598 Query 156003 AT 156004 || Sbjct 43337599 AT 43337600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731537754057600