Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq848 116 7e-21 seq11 107 3e-18 seq706 93.3 8e-14 >seq848 Length=99386 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || || || | || | ||||| |||||| ||| || ||||| | Sbjct 57677 CCACCGCGAAGACGCAAAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCA 57618 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || | | | || || ||||| || |||||||| || || ||||| ||||| ||||| Sbjct 57617 AGAGTCCTTCCATCCTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 57558 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| || || ||||| ||||| ||| |||||| || || ||||| ||| || Sbjct 57557 ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTATCAATCGTGTCTGAACTTTCAACC 57498 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| || || ||||| || || || | ||||||||||| Sbjct 57497 TCCAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACAAATATCTGCAT 57451 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||||| || || | || | || | ||||| ||| || || || Sbjct 57224 ATACCACCACGGAGTCGCAAGACAAGGTGGAGTGTTGATTCTTTCTGAATGTTGTAGTCA 57165 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || |||||||| || ||||||||||| || ||||| ||||| ||| Sbjct 57164 GCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGT 57105 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| | || |||||| || || ||||| ||| Sbjct 57104 GGGATCCCCTCCTTGTCCTGAATTTTTGTCTTCACATTATCGATGGTGTCTGAACTTTCA 57045 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || ||||| || || || | || |||||||| Sbjct 57044 ACCTCCAGGGTAATAGTCTTTCCAGTCAAAGTCTTTACAAAGATCTGCAT 56995 Score = 104 bits (114), Expect = 4e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||||||||| | ||||||||||| ||||| || || ||||| ||||| || Sbjct 63985 TGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGAATC 63926 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || |||||| ||| || ||||| || ||||| || || ||||| || ||| Sbjct 63925 TTAGCCTTGACATTATCTATGGTGTCTGAGCTCTCAACTTCAAGGGTGATGGTCTTTCCA 63866 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | || |||| ||||| |||||| Sbjct 63865 GTGAGAGTCTTAACAAATATTTGCATT 63839 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || |||||||| || | | || ||||| ||||| || ||||| || ||||| ||| Sbjct 56456 TGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGAATT 56397 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| ||| |||||||| |||||||| ||||| ||||||||||| Sbjct 56396 TTGGCCTTAACATTGTCTATGGTATCTGAACTCTCTACTTCGAGAGTGATGGTTTTACCG 56337 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||| ||| || ||||| Sbjct 56336 GTGAGGGTCTTAACGAAGATTTGCAT 56311 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || || || | || | || | |||| ||| || |||||| || ||| Sbjct 56996 ATACCTCCCCTCAGGCGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCT 56937 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||||| ||||||||||| || || |||||||| || Sbjct 56936 GCCAGTGTCCGTCCATCTTCGAGCTGTTTTCCAGCAAAAATCAACCTTTGTTGGTCTGGG 56877 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || ||| |||||||| |||||| || || || Sbjct 56876 GGAATACCCTCCTTGTCCTGGATCTTAGCCTTTACATTGTCTATAGTGTCAGAGCTCTCA 56817 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || || | || |||| || |||||||| Sbjct 56816 ACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 56767 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || || |||| ||| | ||| || ||| ||||| ||| Sbjct 56768 ATGCCACCACGGAGACGGAGAACCAAGTGTAGAGTGGACTCCTTTTGAATGTTATAGTCT 56709 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| ||| | || || | ||||| ||||||||||| | || || ||||| ||| Sbjct 56708 GCCAAAGTTCGGCCATCCTCGAGCTGTTTCCCAGCAAAAATGAGCCTTTGCTGGTCTGGT 56649 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || ||| || || || || || || || || Sbjct 56648 GGGATGCCTTCTTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCC 56589 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || || || || |||| || || | ||||| |||||| Sbjct 56588 ACCTCAAGGGTGATTGTCTTTCCGGTTAGGGTCTTCACAAATATTTGCATT 56538 >seq11 Length=48970052 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || | |||||| || | |||||| |||||| ||||| | Sbjct 43330084 CCACCACGAAGACGAAGAACAAGATGTAAGGTGGACTCTTTCTGAATATTGTAATCAGCC 43330025 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||||||| || ||||||||||| | ||||| ||||| || || Sbjct 43330024 AAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGGGGA 43329965 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || || || || ||| | |||||||| || ||| || Sbjct 43329964 ATGCCTTCCTTGTCCTGAATCTTTGCCTTCACACTGTCAATAGTATCAGAGCTTTCCACC 43329905 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | |||||||| || || ||||| ||||| | ||||| ||||| Sbjct 43329904 TCCAAGGTAATGGTCTTCCCTGTTAAAGTTTTCACAAATATTTGCAT 43329858 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||| || || ||||| | ||| | ||| || || || ||||| Sbjct 43337192 ATGCCACCACGAAGTCGCAACACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCC 43337133 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| || ||||| || | ||||| ||||| || Sbjct 43337132 GCAAGGGTACGCCCATCCTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGC 43337073 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || |||| |||||| ||||||||||| ||| Sbjct 43337072 GGGATACCCTCCTTGTCTTGAATCTTGGTTTTCACATTATCAATAGTATCTGAACTTTCA 43337013 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || ||||| || || || | || |||||||| Sbjct 43337012 ACCTCCAAAGTTATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 43336963 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || | ||||||||| | || || ||||||||| || | Sbjct 43337645 CCACCACGAAGGCGAAGCACAAGATGTAAAGTGGATTCCTTCTGAATATTATAGTCCGCC 43337586 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||||||| || ||||||||||| | ||||| || || ||||| Sbjct 43337585 AAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGA 43337526 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || || || || || || ||| ||||| |||||||| || ||| || Sbjct 43337525 ATGCCCTCCTTGTCCTGAATCTTTGCTTTAACATTGTCAATAGTATCAGAGCTTTCCACC 43337466 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | |||||||| || || || | ||||| | ||||| ||||| Sbjct 43337465 TCCAAGGTAATGGTCTTCCCTGTCAGAGTTTTCACAAATATTTGCAT 43337419 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | |||| || ||||| | || | ||| || ||| || ||||| Sbjct 43329175 ATGCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCG 43329116 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || || ||||||||||| | |||||||| || || Sbjct 43329115 GCGAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGA 43329056 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || || ||| ||||| ||| || ||||| ||| Sbjct 43329055 GGGATACCCTCCTTATCCTGGATCTTGGCTTTCACATTGTCTATGGTGTCTGAGCTTTCC 43328996 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| ||||| || || ||||| | || |||||||| Sbjct 43328995 ACCTCGAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || || ||||| | ||| | |||||| || || ||||| Sbjct 43329631 ATGCCACCACGAAGCCTCAAAACCAAATGCAGAGTGGACTCTTTCTGGATGTTGTAATCC 43329572 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | | || || | ||||||||||||||| || | ||||| ||||| ||| Sbjct 43329571 GCAAGGGTTCTTCCATCTTCGAGTTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGT 43329512 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || ||| || ||| || |||||||| ||| Sbjct 43329511 GGAATACCCTCCTTGTCCTGAATCTTGGCTTTCACGTTATCAATGGTATCTGAACTTTCA 43329452 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || || || || || || | || |||||||| Sbjct 43329451 ACCTCCAAAGTTATGGTCTTTCCCGTCAAAGTCTTCACAAAAATCTGCAT 43329402 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | |||| || ||||| | || | ||| || ||| || ||||| Sbjct 43336736 ATGCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCG 43336677 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || || ||||||||||| | |||||||| || || Sbjct 43336676 GCGAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGA 43336617 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || || ||| ||||| || || ||||| ||| Sbjct 43336616 GGGATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGAGCTTTCC 43336557 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| ||||| || || ||||| | || |||||||| Sbjct 43336556 ACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 >seq706 Length=122390 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || || | || | ||| || ||| || ||||| Sbjct 22788 ATACCACCGCGAAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCA 22847 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| | || || | ||||| ||||||||||| | ||||||||||| ||| Sbjct 22848 GCCAAGGTTCGGCCATCCTCAAGCTGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGT 22907 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || ||| ||||| ||| || || || || Sbjct 22908 GGGATGCCCTCTTTGTCTTGAATCTTGGCTTTAACATTGTCTATGGTGTCAGAGCTCTCC 22967 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || ||||| || || || | || |||| || || |||||| Sbjct 22968 ACCTCAAGGGTTATGGTCTTTCCTGTGAGAGTCTTAACAAAAATTTGCATT 23018 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | | ||| ||||| ||||| || ||||| || ||||| || Sbjct 23100 TGCTTGCCAGCAAAAATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATC 23159 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || || ||| ||| ||||| || || ||||| ||||| ||||| |||||| Sbjct 23160 TTGGCCTTCACGTTATCTATGGTATCGGAACTCTCCACTTCGAGAGTGATGGTCTTACCA 23219 Query 172044 GTTAATGTTTTAATGAATATCTGCAT-TTTATTATAAAA 172081 || | || |||| || || ||||| | |||||| || Sbjct 23220 GTCAGGGTCTTAACAAAGATTTGCATCTACATTATACAA 23258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904722624388800