Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 159 1e-33 seq7 129 2e-24 seq4 123 7e-23 seq59 116 1e-20 seq10 100 8e-16 seq5 93.3 1e-13 seq3 93.3 1e-13 >seq8 Length=20383548 Score = 159 bits (176), Expect = 1e-33 Identities = 323/472 (68%), Gaps = 22/472 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG---CTTAAATCCA 288945 || || || ||||| || ||||| | |||| ||| |||| | || ||||||| Sbjct 11725099 ATGTCAGCCCTGTTAGTAGCTGCAACGACAATGATAC---CGGTATTACCCTCAAATCCA 11725043 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| ||| |||| ||| || || || ||||| ||||||||||| |||| Sbjct 11725042 TCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTC---CCTC----- 11724991 Query 289006 TCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCAC 289061 |||| | || | ||| ||| | ||||||||||||||||| || | ||||| | Sbjct 11724990 -CACCA-ATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAAAATAAT 11724933 Query 289062 ACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACC 289121 ||||||| ||| | | | || | ||||| || | || || || || |||| ||| Sbjct 11724932 GCACGGAGCATTCTCTTTGGCCTTCTTGAATAAATCACGGACTCGAGAAGCACCAATACC 11724873 Query 289122 AACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGC 289180 |||| |||| || ||||| |||||| | || | |||| | || | ||| |||||| | Sbjct 11724872 AACAAACATCTCAACAAACTCAGAACCTGAGA-TTGAGAAAAACGGGACACCTGCTTCAC 11724814 Query 289181 CTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTC 289240 |||| | ||| | || | ||||||||| || |||||||| || || | | ||||| | Sbjct 11724813 CTGCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACAC 11724754 Query 289241 CCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAA 289300 | ||||||| ||||||| ||| | || ||||||| |||||| ||| || || | Sbjct 11724753 CTTTTGGTATACGTGCCCCAACAGCAGTGTACCTCTCAGGCTTCTTTAGAAACTCCACCA 11724694 Query 289301 TTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| || || | || || ||||| ||| || |||||| |||| || Sbjct 11724693 CCTCCATAAAATCCTGCTTGGCTTCATCCACTCCAGCAACATCATCAAATGT 11724642 Score = 86.0 bits (94), Expect = 2e-11 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 |||||||||||| ||||| |||||| | ||| | | | |||| |||| ||| Sbjct 17556682 ACACACATGGACCCTGTATGCATCACTTTGATCAAACAATCTTTCCTTTAGGAAGTGAGC 17556623 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 || || || | ||||| ||||| || ||||| || || || || ||||| ||||| || Sbjct 17556622 AGCTCCATGAGCTATCATGCAATCTCGTTCCATCTCTCCAAATCGGAGACCTCCATCTCG 17556563 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | || ||||||||||| || | |||||| | || |||||| || ||| Sbjct 17556562 TGACCGTCCCTCGGCAGGTTGCCTTGTGAGAATCTGCACAGGACCCCGTCCACGAGAATG 17556503 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| |||| ||||||||||| || | ||||| ||| || || | ||| || Sbjct 17556502 GATCTTGTCATCAACCATATGCTTCAGTCTTTGGTAATATGTAGGGCCAAGGAAAAT 17556446 >seq7 Length=19579009 Score = 129 bits (142), Expect = 2e-24 Identities = 334/506 (66%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 |||||||||||| || | | | ||||||| || | || || | |||||| || || Sbjct 15235355 CCTATCAAACCTCCCGGGTCTAAGCAATGCTGCATCGAGAATTTCAGGTCTGTTAGTGGC 15235296 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || | || | || | ||| |||| |||||||| || | | ||||| Sbjct 15235295 AGCAATGACTATAACCCCAGTGTTTTCAGTAAAACCATCCATTTCAGTGAGCAACTGATT 15235236 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 |||||||| ||||||||||||||| || | | || ||| | | | ||| | | Sbjct 15235235 CAGTGTTTGCTCCCTTTCATCATTTCCTCCACCT--AT-ACCTGTACCTCTC---TGCCT 15235182 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || |||||||| || || |||||||| |||| ||| || || |||||| | || | Sbjct 15235181 CCCTACAGCATCTATCTCATCAATGAATATCAAACAAGGTGAGTTTTGTTTGGCCTTGTT 15235122 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || || || || | || || || | ||| ||| |||| || | || || || | Sbjct 15235121 AAACAAATCCCTCACCCTTGAGGCCCCTACACCCACAAACATCTCAATGAACTCTGATCC 15235062 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | ||| | || || || || || | |||| | ||||| | |||||| Sbjct 15235061 AGATAGAGAGAAGAAAGGAACGCCAGCCTCTCCAGCAATTGCCTTGGCCAGCAATGTCTT 15235002 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || || || ||||| || | || ||||| || || || | |||||| ||| ||| Sbjct 15235001 TCCAGTCCCTGGTGGCCCTACCAAAAGAACCCCTTTGGGGATTTTTGCTCCAACAGCAGA 15234942 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 | | ||||| || |||| || || || ||||| || | | || | || || ||||| Sbjct 15234941 AAACTTCTCTGGTGTCTTCAAGAACTCAACAATCTCTTGGAAGTCTTGCTTGGCTTCATC 15234882 Query 289329 ACATCCTGCTACATCAGCAAAAGTAA 289354 | ||| |||||||| |||| |||| Sbjct 15234881 AACTCCAGCTACATCCTCAAATGTAA 15234856 >seq4 Length=12502730 Score = 123 bits (136), Expect = 7e-23 Identities = 315/469 (67%), Gaps = 19/469 (4%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT---AGATTCGGTTTGCTTA 288939 ||||| ||||| | ||| |||||| ||||||| ||||||| ||| |||| | Sbjct 3278836 TCTAAGATATCAGGTCTATTTGTTCCTGCCAACACAACAACCCCAGA---GGTTGTTCCA 3278780 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || | |||||| | || ||| | |||||||||| ||| Sbjct 3278779 AAACCATCCATCTCCACCAACAATTGATTTAAAGTACTTTCACGCTCATCATTTGCACCA 3278720 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 ||| ||| | | |||| | ||||| |||||||| ||||||||||| || Sbjct 3278719 ---GAAAAACCTCCACGCCCCCTTGCTCGACCAATTGCATCAATCTCGTCAATGAATATG 3278663 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGC--AAATAATTCTCTTACACGGGATGCTCCAA 289117 | || |||| | || || || || | ||||| | ||| || | |||| ||||| Sbjct 3278662 ATACTTGGAGCACACTGCCTTGC--TTCCTGAAATAGGTTTCTCACCCTAGATGGTCCAA 3278605 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATG-AATGTTACATTTGCT 289176 |||||| ||||||| | || |||||| | |||| | ||| | |||| ||| | Sbjct 3278604 CCCCAACAAACATTTCCATGAAATCAGAACCAGATA-TAGAAAGAAATGGCACACCAGAC 3278546 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || ||||| ||| |||| | ||| || || ||||| || || || || | || ||| Sbjct 3278545 TCCCCTGCAGTTGCTTTCGCTAAAAGGGTTTTTCCTGTGCCTGGAGGACCGACCAAGAGA 3278486 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAG-ACTT-ATATTTCTCAGGGCTCTTTAAAAATT 289294 | || || || | |||||| ||| || ||| |||||||| ||| |||| | || | Sbjct 3278485 GCACCTTTAGGAATTTTTGCACCA--AGTTCTTCATATTTCTTTGGGTTCTTGAGGAAGT 3278428 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || ||| | |||||||| ||||| || || ||||| Sbjct 3278427 GAACAAACTCCATAATTTCTTGCTTTGCCTCGTCACAGCCAGCAACATC 3278379 Score = 122 bits (134), Expect = 3e-22 Identities = 318/472 (67%), Gaps = 25/472 (5%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT---AGATTCGGTTTGCTTA 288939 ||||| ||||| | ||| |||||| ||||||| ||||||| ||| |||| | Sbjct 3291713 TCTAAGATATCAGGTCTATTTGTTCCTGCCAACACAACAACCCCAGA---GGTTGTTCCA 3291657 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || | |||||| | || ||| | |||| ||||| ||| Sbjct 3291656 AAACCATCCATCTCCACCAACAATTGATTTAAAGTACTTTCACGCTCATTATTTGCACCA 3291597 Query 289000 CTTGAATCACC--CGAATCGCTCCttttttt-ACCAACAGCATCAATTTCGTCAATGAAA 289056 ||| ||| || ||| || || | ||||| |||||||| ||||||||||| Sbjct 3291596 ---GAAAAACCTCCG---CGCCCCCTTGCTCGACCAATTGCATCAATCTCGTCAATGAAT 3291543 Query 289057 ATCACACACGGAGAATTTTGTCTCGCAATTGC--AAATAATTCTCTTACACGGGATGCTC 289114 | | || ||||| | || || || || | ||||| | ||| || | |||| || Sbjct 3291542 ACGATACTCGGAGCACACTGCCTTGC--TTCCTGAAATAGGTTTCTCACCCTAGATGGTC 3291485 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATG-AATGTTACATTT 289173 ||| |||||| ||||||| || || |||||| | |||| | ||| | |||| ||| Sbjct 3291484 CAACCCCAACAAACATTTCCACGAAATCAGAACCAGATA-TAGAAAGAAATGGCACACCA 3291426 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 | || ||||| ||| |||| | ||| || || ||||| || || || || | || Sbjct 3291425 GACTCCCCTGCAGTTGCTTTCGCTAAAAGGGTTTTCCCTGTGCCTGGAGGACCGGCCAAG 3291366 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCAGCAG-ACTT-ATATTTCTCAGGGCTCTTTAAAA 289291 ||| | || || || | |||||| ||| || ||| |||||||| ||| |||| | | Sbjct 3291365 AGAGCACCTTTCGGAATTTTTGCACCA--AGTTCTTCATATTTCTTTGGGTTCTTGAGGA 3291308 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | | |||| ||| || ||| | |||||||| ||||| || || ||||| Sbjct 3291307 AGTGAACAAACTCCATAATTTCTTGCTTTGCCTCGTCACAGCCAGCAACATC 3291256 >seq59 Length=585201 Score = 116 bits (128), Expect = 1e-20 Identities = 250/365 (68%), Gaps = 14/365 (4%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG---CTTAAATCCA 288945 || || || ||||| |||||||| | |||| ||| | || | || ||| ||| Sbjct 286633 ATGTCAGCCCTGTTGGTTGCTGCAATGACAATGATAC---CAGTATTACCCTCAAACCCA 286689 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| ||| |||| ||| || || || ||||| ||||||||||| ||| | || Sbjct 286690 TCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACCAC--CAA 286747 Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065 | ||| | || || |||| | | ||||||||||||||||| |||| || | | || Sbjct 286748 T-ACC--AGTCCCT-CTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 286803 Query 289066 GGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACA 289125 || | ||| | | | || | || || || | || || || || |||| ||||||| Sbjct 286804 GGGGCATTCTCTTTGGCCTTCTTGAACAAATCACGGACTCGAGAAGCACCAACACCAACA 286863 Query 289126 TACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGC 289184 |||| || ||||| |||||| | |||| | || | |||| ||| ||||| || || Sbjct 286864 AACATCTCAACAAACTCAGAACCTGATA-TCGAGAAAAATGGAACACCAGCTTCACCAGC 286922 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | ||| | || | ||| ||||| || ||||| || || || ||| |||||||| || Sbjct 286923 AATAGCCTTAGCTAAAAGGGTCTTCCCAGTTCCTGGAGGACCAACTAGAAGAACTCCTTT 286982 Query 289245 TGGTA 289249 |||| Sbjct 286983 CGGTA 286987 >seq10 Length=22571102 Score = 100 bits (110), Expect = 8e-16 Identities = 106/138 (77%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||| |||||||||||||| || || | |||||||||| ||||||||| ||| Sbjct 20258683 TTGCAAATAGATCTCTTACACGGGAAGCACCCATGCCAACATACAATTCTACAAACTCAC 20258624 Query 289145 AAGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| || |||| || |||| |||| ||||| ||||| || ||| | || || | Sbjct 20258623 TAGCAGAACAACTT--ATAAATGGCACATCAGCTTCCCCTGCCACAGCCTTTGCTAGTAA 20258566 Query 289203 TGTCTTACCTGTTCCAGG 289220 ||||||||||| ||||| Sbjct 20258565 AGTCTTACCTGTGCCAGG 20258548 >seq5 Length=5133333 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| ||| ||||| ||||| |||||||| | |||||| |||| | Sbjct 4457634 TACCTTTCCTCTTGCCTCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGCA 4457693 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| || | ||||||||| || || ||||| || || ||||| | |||| | | Sbjct 4457694 GCATTGGGACAATACCATTTGATGTCCCATTTGTGCCACGAATGTAACTGCCAGTGGCAC 4457753 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| | ||||||| | ||||| || |||| |||| ||| ||| || |||| Sbjct 4457754 GAATGTCATGAATAGAAACACCAATTCCTCCTGCTGATTTGCTGATTATAGCACACTCCT 4457813 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | ||| | | || || || || ||||| || ||| Sbjct 4457814 TCAAAGTGTCATATATTCCCTCTATGCTATCATTTTTCAT 4457853 >seq3 Length=29476785 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| || ||||| |||||||| ||||| | |||||| |||| | Sbjct 2832851 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGCA 2832910 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 ||| |||| || |||||||||||| ||||| || || ||||||| Sbjct 2832911 ACATTGGAACAACACCATTGGAAGTCCCATTTGTACCACGAATAT 2832955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471128616424632