Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq11 105 7e-18 seq848 89.7 5e-13 >seq11 Length=48970052 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| |||||| | || ||||| | || || || || || |||||||||||| Sbjct 43336734 GCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGC 43336675 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || ||| ||| ||||| || || |||||| | ||||| | || ||||| ||||| Sbjct 43336674 GAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGG 43336615 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| || || ||| | | || | ||||||| | ||| || Sbjct 43336614 GATACCCTCTTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGAGCTTTCCAC 43336555 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| |||||||| ||||| || || || ||||| Sbjct 43336554 CTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| |||||| | || ||||| | || || || || || |||||||||||| Sbjct 43329173 GCCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGC 43329114 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || ||| ||| ||||| || || |||||| | ||||| | || ||||| ||||| Sbjct 43329113 GAGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGG 43329054 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || || || || || ||| | | || | ||||||| | ||| || Sbjct 43329053 GATACCCTCCTTATCCTGGATCTTGGCTTTCACATTGTCTATGGTGTCTGAGCTTTCCAC 43328994 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| |||||||| ||||| || || || ||||| Sbjct 43328993 CTCGAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| ||||| | || || ||||| || ||||||||||| | || || || Sbjct 43329614 CAAAACCAAATGCAGAGTGGACTCTTTCTGGATGTTGTAATCCGCAAGGGTTCTTCCATC 43329555 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||||||||||||||||||| |||| || | ||||| || || || || || || ||||| Sbjct 43329554 TTCGAGTTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 43329495 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 ||| || ||| | | || | || |||| ||| || || | ||| | || Sbjct 43329494 CTGAATCTTGGCTTTCACGTTATCAATGGTATCTGAACTTTCAACCTCCAAAGTTATGGT 43329435 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || ||||| || || || || || ||||| Sbjct 43329434 CTTTCCCGTCAAAGTCTTCACAAAAATCTGCAT 43329402 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||||| || || | || || || || || ||||||||||| Sbjct 43329401 GCCACCACGAAGCCGCAAAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGC 43329342 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || ||||| || ||||| |||||| |||| || | ||||| || || || Sbjct 43329341 AAGGGTTCTTCCATCTTCCAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGG 43329282 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| ||| || ||| | | || | ||| |||| ||| || Sbjct 43329281 GATACCCTCCTTGTCCTGAATCTTGGCTTTCACATTATCAATCGTATCTGAACTTTCAAC 43329222 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || ||||| ||||| ||||| |||||||| Sbjct 43329221 CTCCAAGGTGATAGTCTTTCCCGTCAAAGTTTTGACGAAAATTTGCAT 43329174 >seq848 Length=99386 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 || || || | ||| | ||| || |||| || || || ||||| ||||||||||| ||| Sbjct 63838 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCT 63779 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || || ||||| ||||| |||||| | || || | |||||| || || || Sbjct 63778 -AGGGTTCTGCCATCCTCGAGCTGTTTCCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGG 63720 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| ||| || || | | || | ||||| | | || || Sbjct 63719 GATGCCTTCTTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCAC 63660 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| ||||| | || || ||||| |||||||| Sbjct 63659 CTCAAGGGTGATGGTCTTACCGGTGAGAGTCTTAACGAAGATTTGCAT 63612 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || ||||| |||||||||||| | || | || || || || || ||| Sbjct 56507 GTGGACTCCTTTTGGATGTTGTAATCGGCGAGGGTACGGCCATCCTCAAGCTGCTTGCCA 56448 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| ||||||||||| ||||| || |||||||| ||||| |||||| || Sbjct 56447 GCAAAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGAATTTTGGCCTTA 56388 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || |||| |||||||| | ||| | || || ||||| | || Sbjct 56387 ACATTGTCTATGGTATCTGAACTCTCTACTTCGAGAGTGATGGTTTTACCGGTGAGGGTC 56328 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| |||||||| Sbjct 56327 TTAACGAAGATTTGCAT 56311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||||||| | |||| ||||| ||||| || ||||||||||| Sbjct 57677 CCACCGCGAAGACGCAAAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCA 57618 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || | ||| || |||||| |||||| | ||||| || || || Sbjct 57617 AGAGTCCTTCCATCCTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 57558 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| ||||| ||| | | || | |||||||| ||| || Sbjct 57557 ATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTATCAATCGTGTCTGAACTTTCAACC 57498 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | || | ||||| || ||||| || || || ||||| |||||| || Sbjct 57497 TCCAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACAAATATCTGCATACCT 57447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488320881955200