Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_024785.1 Length=44844 Score E Sequences producing significant alignments: (Bits) Value seq24717 138 3e-28 >seq24717 Length=291 Score = 138 bits (152), Expect = 3e-28 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 17517 CCAATGTTGTAGGTCAGTGATACTAGAGCGTCAAATTGATTTTGACTAAGTGGAACTTTA 17576 ||||||||||||| ||||| || || ||||| || ||||||||| |||| || | ||| Sbjct 55 CCAATGTTGTAGGCAAGTGACACCAGTGCGTCGAACTGATTTTGATTAAGCGGTATTTTC 114 Query 17577 ACAGATTCATTTACAACATTTTCAAACTTAATTAAATCATGTTTGAAGTAGGTTTTTGCT 17636 || | || ||| || ||||||||| ||||||||||| | ||| || || ||| Sbjct 115 ACCTCATTGTTGACAGCAGATTCAAACTTCTTTAAATCATGTGCCATGTATGTCTTAGCT 174 Query 17637 TGTTCAGATGTACATGTATCGCCTTTCTTAACTTTTGTACCATTGGGGTAGACGGTTGTA 17696 ||| | || || |||||||||||| ||||||| | || || || || || || ||| Sbjct 175 TGTGCTTCCGTGCAGGTATCGCCTTTCATAACTTTAATGCCGTTCGGATAAACTGTGGTA 234 Query 17697 CCTATGCCGATGGTCCATACGCCAACACCATCATCATATGCAGT 17740 || | || || ||||| || || || ||||| ||||| ||||| Sbjct 235 CCGAAACCAATCGTCCACACTCCCACCCCATCGTCATAGGCAGT 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143316992783392