Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq11 140 2e-28 seq6 96.9 2e-15 seq848 95.1 8e-15 seq2 91.5 1e-13 seq706 89.7 3e-13 seq8 89.7 3e-13 >seq11 Length=48970052 Score = 140 bits (154), Expect = 2e-28 Identities = 172/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| ||||||| ||||||||| || ||| ||| || || ||||||||||||| | Sbjct 43336733 CCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCG 43336674 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| || | || || || |||||||||| | ||| ||||| | || Sbjct 43336673 AGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGG 43336614 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||| |||||||| || || |||| |||| ||| | |||||| ||| ||| Sbjct 43336613 ATACCCTCTTTGTCCTGGATCTTGGCTTTC-ACATTGTCGATGGTGTCTGAGCT---TTC 43336558 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| |||| ||||| || ||||| || || ||||| |||||||||||||| Sbjct 43336557 CACCTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 127 bits (140), Expect = 1e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| ||||||| ||||||||| || ||| ||| || || ||||||||||||| | Sbjct 43329172 CCACCTCTTAAACGTAGCACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCG 43329113 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| || | || || || |||||||||| | ||| ||||| | || Sbjct 43329112 AGGGTTCTCCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGG 43329053 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||| || || || || || |||| |||| ||| | |||||| ||| ||| Sbjct 43329052 ATACCCTCCTTATCCTGGATCTTGGCTTTC-ACATTGTCTATGGTGTCTGAGCT---TTC 43328997 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | ||||| || ||||| || || ||||| |||||||||||||| Sbjct 43328996 CACCTCGAGGGTGATGGTCTTACCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || ||||||||||| |||||| ||| || || ||||||||||| | || || || | Sbjct 43337177 CGCAACACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGCCCA 43337118 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | ||||| |||||||| || | | |||||| ||| |||| | ||| || ||| Sbjct 43337117 TCCTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCCTTG 43337058 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGT 33710 || ||| || |||| |||| || | || || ||| ||| || || | || Sbjct 43337057 TCTTGAATCTT-GGTTTTCACATTATCAATAGTATC---TGAACTTTCAACCTCCAAAGT 43337002 Query 33711 GATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || || || ||||| |||||||| Sbjct 43337001 TATGGTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCAT 43336963 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| |||||| |||||| || ||||||||||| | || || | | | || Sbjct 43329613 AAAACCAAATGCAGAGTGGACTCTTTCTGGATGTTGTAATCCGCAAGGGTTCTTCCATCT 43329554 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || ||||| || | | |||||| ||| | || | ||| || ||||| Sbjct 43329553 TCGAGTTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCC 43329494 Query 33658 GCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGA---TTCCACGTCAACCGTGATC 33714 ||| || ||||| || | ||| || ||| ||| || || | || || Sbjct 43329493 TGAATCTTGGCTTTCACGTTATCAATGGTATC---TGAACTTTCAACCTCCAAAGTTATG 43329437 Query 33715 GTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || || ||||| |||||||| Sbjct 43329436 GTCTTTCCCGTCAAAGTCTTCACAAAAATCTGCAT 43329402 >seq6 Length=23791330 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 10734058 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 10733999 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | |||||||| || |||| | || || ||||| || || Sbjct 10733998 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 10733939 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | | | ||| | |||||| || ||||| || | || ||||||||||| || Sbjct 10733938 GCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTTATCGTTTTACCCGT 10733880 Query 33726 TAACGTTTTTACAAAGATCTGCATAGT 33752 || ||||| || ||||||||||| || Sbjct 10733879 TAGGGTTTTCACGAAGATCTGCATCGT 10733853 Score = 86.0 bits (94), Expect = 4e-12 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | || | || || || ||| || || ||| Sbjct 23717524 AAAATCTGCATGCCACCCCTGAGACGCAGAACAAGGTGAAGGGTTGACTCCTTCTGGATG 23717583 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | ||| |||||| | || || | |||||||| ||||||||||| | ||| Sbjct 23717584 TTGTAGTCAGCGAGGGTGCGTCCATCCTCAAGCTGTTTTCCAGCAAAAATCAACCTTTGC 23717643 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | || || ||||| ||| || | | || | ||| | |||||| Sbjct 23717644 TGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTT-GGACTTTACGTTGTCGATGGTGTC 23717702 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||| |||| ||||| || || || || | ||||| || || |||||||| Sbjct 23717703 GGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTGACGAATATCTGCAT 23717762 >seq848 Length=99386 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || |||||||| || | || || | | | || |||||||| || || |||||| Sbjct 57185 TCTTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAA 57126 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | |||||| ||| | || | || || ||||| |||||| ||| | |||| Sbjct 57125 ATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATTTT-TGTCTTCACATT 57067 Query 33679 GTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 || | |||||| ||| ||| || || | || || || || || || || || || Sbjct 57066 ATCGATGGTGTC---TGAACTTTCAACCTCCAGGGTAATAGTCTTTCCAGTCAAAGTCTT 57010 Query 33735 TACAAAGATCTGCATA 33750 |||||||||||||||| Sbjct 57009 TACAAAGATCTGCATA 56994 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || || ||| ||| ||||| ||||||||||||| | Sbjct 56537 CCACCACGGAGACGGAGCACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGGCG 56478 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || || || ||||| || | ||| ||||| || | || Sbjct 56477 AGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGTGGG 56418 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||||| ||||| |||||| | | ||||| ||| | ||| || ||| || Sbjct 56417 ATGCCTTCCTTGTCTTGAATTTT-GGCCTTAACATTGTCTATGGTATC---TGAACTCTC 56362 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| |||||||| || | || || || ||||| ||||| Sbjct 56361 TACTTCGAGAGTGATGGTTTTACCGGTGAGGGTCTTAACGAAGATTTGCAT 56311 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| ||| ||||| ||||||||||| | Sbjct 63838 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCT 63779 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | ||||| || |||||||| | | ||||| ||| | || Sbjct 63778 AGGGTTCTGCCATCCTCGAGCTGTTTCCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 63719 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||| || | | ||||| ||| | |||||| ||| || Sbjct 63718 ATGCCTTCTTTGTCTTGAATCTT-AGCCTTAACATTGTCAATGGTGTCAGAGCT---CTC 63663 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| |||| ||||| || ||||| || | || || || ||||| ||||| Sbjct 63662 CACCTCAAGGGTGATGGTCTTACCGGTGAGAGTCTTAACGAAGATTTGCAT 63612 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || || | || ||||| |||||| || ||||||||||| | Sbjct 64294 CCACCACGAAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCAGCA 64235 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || |||||||| || || ||||| ||||| | || || ||| | || Sbjct 64234 AGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTTTGTTGGTCTGGTGGA 64175 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | || || ||||| ||||| || || |||| ||| | ||||| ||| ||| Sbjct 64174 ATTCCCTCCTTGTCTTGGATTTT-TGCTTTGACATTGTCAATAGTGTC---TGAACTTTC 64119 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || || || || |||||||||||||| Sbjct 64118 AACCTCCAAGGTAATAGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 64068 >seq2 Length=36921656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || ||||| ||| || || ||||| || || | Sbjct 32545209 ACCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTATAGTCAGC 32545268 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | || || ||||| || ||||| | |||||| ||| | || Sbjct 32545269 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 32545328 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || ||||| | | ||| | ||||||| ||| | Sbjct 32545329 GATTCCTTCCTTGTCCTGGATCTTAGTTTTCA-CGTTGTCGATGGTGTCGGAGCTTTCGA 32545387 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || || ||||||||||| Sbjct 32545388 CCTCGAGGGTGATTGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 32545436 >seq706 Length=122390 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || |||||| || ||||| ||||||||||||| Sbjct 23019 CCACCGCGGAGACGGAGCACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCGGCA 23078 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || || || |||||||| | ||||||||| ||| | || Sbjct 23079 AGGGTTCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCTGGTGGG 23138 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||||| ||||| ||| || |||| || | ||| ||| ||||| Sbjct 23139 ATCCCTTCCTTGTCTTGAATCTTGGCCTTCACGTTATCTATGGTATCGGAACTCTCCACT 23198 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || |||||||| ||||| Sbjct 23199 TCGAGAGTGATGGTCTTACCAGTCAGGGTCTTAACAAAGATTTGCAT 23245 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || || ||| ||| ||||| ||||||||||| | Sbjct 22790 ACCACCGCGAAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGC 22849 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||||| || |||||||| | | ||| || ||| | || Sbjct 22850 CAAGGTTCGGCCATCCTCAAGCTGTTTCCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGG 22909 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || |||||||| ||| || | || ||||| ||| | |||||| ||| | Sbjct 22910 GATGCCCTCTTTGTCTTGAATCTT-GGCTTTAACATTGTCTATGGTGTCAGAGCT---CT 22965 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| || || || || ||||| | || || ||||| || ||||| Sbjct 22966 CCACCTCAAGGGTTATGGTCTTTCCTGTGAGAGTCTTAACAAAAATTTGCAT 23017 >seq8 Length=20383548 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| |||| || |||||||| || Sbjct 13445054 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAA 13445113 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || |||| | || || ||||| || || || | | | Sbjct 13445114 TATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 13445172 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| || ||||| || | || ||||||||||| |||| ||||| | Sbjct 13445173 TGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTTATCGTTTTACCCGTTAGGGTTTTCA 13445232 Query 33737 CAAAGATCTGCATAGT 33752 | || |||||||| || Sbjct 13445233 CGAAAATCTGCATCGT 13445248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328557633861120