Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq706 84.2 2e-11 seq11 84.2 2e-11 >seq2 Length=36921656 Score = 123 bits (136), Expect = 2e-23 Identities = 350/528 (66%), Gaps = 16/528 (3%) Strand=Plus/Plus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || |||||| ||| |||||||| |||||| || |||||||| | ||| | | Sbjct 1442556 CCCTGCGTTGCCAAGAAGGCCCAATGGGCCCTGCGCTGGATCGACTCCT---CCGACTCC 1442612 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTT 46880 | || |||||||| || || ||||| ||||| || | || || || || || || Sbjct 1442613 TTCGCTGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCTGGAAGCTTC 1442672 Query 46881 GCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAG 46940 | ||||||| | | || | ||| | ||||| ||||| || ||| ||||| Sbjct 1442673 TGCTCCATTTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGCCTCACTTTCTCCAACGAA 1442732 Query 46941 TTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGC 47000 | || || |||||||| || || ||| ||||| || || |||| ||| || Sbjct 1442733 CTCATTTCCCGCGACGAGGGGCTTCACTGCGACTTCGCCTGCCTCTTGTACTCTCTGC-- 1442790 Query 47001 GTGAATGAGAAATTAAACTCGGA-CACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCAT 47059 ||| |||| | | | ||| | || ||| || | ||||| || ||| || Sbjct 1442791 -TGAGGAAGAAGCTCAGCGAGGAGCGCGTGAAGGAG-ATCGTGAGGGACGCTGTGGATAT 1442848 Query 47060 CGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 ||| | ||||||| | |||| ||||| || ||| |||||||| ||||| | || Sbjct 1442849 CGAGAGGGAGTTTGTG--TGCGACGCGCTTCCGTGCGCGTTGCTGGGGATGAATGGGGAG 1442906 Query 47118 TCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCG 47177 | ||| | | || ||||||||||||||||||||| ||||||| ||| || | | | Sbjct 1442907 TTGATGGGTCAGTACATTGAGTTTGTGGCGGATCGTTTGTTGGTTGCGCTTGG-CTGCGG 1442965 Query 47178 AAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAA 47236 || | | |||| || || || ||||| | ||| | |||||| | |||| || Sbjct 1442966 GAAGGTGTACAATGTTCAGAACCCTTTTGACTGGATGGAGCTGATTTCGTTGCAGGGGAA 1443025 Query 47237 AACCAATTTTTTCGAGAAACGAGTCGGAGAGTATAAG--CGCTTCGGT 47282 |||||||| || ||||| || || || |||||| || |||||||| Sbjct 1443026 GACCAATTTCTTTGAGAAGCGCGTGGGGGAGTATCAGAAGGCTTCGGT 1443073 >seq706 Length=122390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||| ||| | ||| ||| ||| || ||||| || || | | Sbjct 23052 GATTCCTTTTGGATGTTGTAATCGGCAAGGGTTCGCCCATCCTCAAGCTGCTTGCCAGCA 23111 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || |||||||| || ||||| || || ||||| || || ||| || |||| Sbjct 23112 AAAATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCCTTCACG 23171 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||||||||||| || | || ||||||||||| || || Sbjct 23172 TTATCTATGGTATCGGAACTCTCCACTTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTA 23231 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 23232 ACAAAGATTTGCAT 23245 >seq11 Length=48970052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | ||||| || || |||||||| || | ||||||| | Sbjct 43337177 CGCAACACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGCCCA 43337118 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || |||||||| |||| | |||| || | ||| || ||||| || || || || || Sbjct 43337117 TCCTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCCTTG 43337058 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | || | |||||| | || || || | || | Sbjct 43337057 TCTTGAATCTTGGTTTTCACATTATCAATAGTATCTGAACTTTCAACCTCCAAAGTTATG 43336998 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||||| || || | |||||||||||| Sbjct 43336997 GTCTTTCCAGTCAAGGTCTTCACAAAAATCTGCATG 43336962 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | |||||| |||||||||| | || || || || || ||||| || | ||| Sbjct 43337412 ACGAAGGCGCAACACCAAATGTAGAGTGGATTCCTTCTGGATATTGTAATCAGCAAGGGT 43337353 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 |||| |||||| ||||| || || | | |||| || | ||| || ||||| || ||||| Sbjct 43337352 ACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATGCC 43337293 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| ||| || |||| | || | |||||| | || || || | Sbjct 43337292 CTCCTTATCCTGAATCTTAGCCTTCACATTGTCAATAGTATCAGAACTTTCAACCTCCAA 43337233 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || |||| ||| || | |||||||||||| Sbjct 43337232 AGTTATGGTCTTCCCTGTCAAAGTCTTCACAAAAATCTGCATG 43337190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476393531664960