Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 343 2e-88 seq3 86.0 9e-11 >seq2 Length=36921656 Score = 343 bits (380), Expect = 2e-88 Identities = 409/546 (75%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| ||||||| | ||||||| |||| |||| | || |||||||||||| | Sbjct 1442181 AACCCCGACCGCTTCTGCATGTTCCCAATCCAGTACCCCCAAATCTGGGAAATGTACAAG 1442240 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCG-ACACGGTCC 1455852 |||| |||| ||||| || ||||| || ||||||||||||||| ||| | || || Sbjct 1442241 AAAG-CCGAAGCCTCTTTCTGGACGGCGGAGGAGGTCGACCTCT-CGCAGGACCTCCGCC 1442298 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 |||||| || || | ||||| ||| ||||| ||| ||| |||||||||||||| ||| Sbjct 1442299 ACTGGGACTCCCTCACCGACGGCGAACGCCACTTCGTCACCCACGTCCTCGCCTTCTTT- 1442357 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 |||||| ||| |||||||| |||||| || ||||||||||| ||||| ||| ||||| Sbjct 1442358 GCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCCGCTTCATGAAGGAGATCCAA 1442417 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | ||||| || || ||||| ||||| ||||||||||| ||||||||||| || Sbjct 1442418 GTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAG 1442477 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | ||| ||||| |||| |||||| ||||| | | | ||||||| |||||||||| Sbjct 1442478 ATGTACAGCCTCCTCCTCGAAACCTACATCAAGAGCTCCGACGAGAAGCACCACCTCTTC 1442537 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 | ||||||||| || | || | || || |||||| | ||||| || |||||| Sbjct 1442538 CACGCCATCGAAACCATCCCCTGCGTTGCCAAGAAGGCCCAATGGGCCCTGCGCTGGATC 1442597 Query 1456153 AACAAGGAGGGCCT-CGAC-ACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGG 1456209 || ||| |||| ||| || ||||| |||||| ||| ||| |||||||||| Sbjct 1442598 GAC-------TCCTCCGACTCCTTCGCTGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGG 1442650 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 ||||| ||||| || || |||||| |||| || |||||||||||||||||| | ||||| Sbjct 1442651 AATCTTCTTCTCTGGAAGCTTCTGCTCCATTTTCTGGCTCAAGAAGCGCGGCTTGATGCC 1442710 Query 1456270 CGGTCT 1456275 || || Sbjct 1442711 TGGCCT 1442716 Score = 89.7 bits (98), Expect = 7e-12 Identities = 166/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| |||||||||||||| || || | | || ||| |||| |||| || Sbjct 22578408 ATCTTCAAGGTCCTCAAGCAGGTGCATCCT-GA--CATCGG--CATT-TCCAGCAAGGCC 22578355 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCG-AGGCCGG 725029 ||| |||||||||| || | |||||||| |||| ||| ||| | | ||| Sbjct 22578354 ATGGGGATCATGAACAGCTTCATTAACGACATCTTCGAGAAGCTCG-CACAGGAAGCCTC 22578296 Query 725030 TCGCCTGGCGCGCTCCAACAAGC-GCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || |||| |||| ||||||| || | || || | || ||||| |||||||| | Sbjct 22578295 GCGTTTGGCTCGCTACAACAAGAAGCCA-ACTATTACTTCTCGGGAGATTCAGACCGCTG 22578237 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || | ||| || || || |||| |||||||||||||| ||||||| Sbjct 22578236 TGCGTTTGGTGCTGCCTGGGGAGCTTGCCAAACACGCCGTCTCCGAAGGCACCA 22578183 >seq3 Length=29476785 Score = 86.0 bits (94), Expect = 9e-11 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| | ||||| ||||| ||| || | | ||| ||| |||| |||| || Sbjct 17719590 ATCTTCAAGGTTTTGAAGCAAGTGCATCCC-GA--CATCGGG--ATC-TCCAGCAAGGCC 17719537 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| |||||||||| || | |||||||| | || ||| ||| ||| || Sbjct 17719536 ATGGGGATCATGAACAGCTTCATAAACGACATCTTTGAGAAACTCGCGCAG-GAGTCCTC 17719478 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 || |||| | | ||||||| ||| ||| | | ||||||||||| || || || Sbjct 17719477 CCGATTGGCCAGGTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAAACGGCGGT 17719418 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || || | | ||| || || |||| ||||||||| ||||| ||||||| Sbjct 17719417 GCGTTTGGTCCTCCCCGGAGAGCTCGCCAAGCACGCCGTTTCCGAAGGCACCA 17719365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174287235646832