Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 141 1e-28 seq3 123 3e-23 seq2 93.3 6e-14 >seq5 Length=5133333 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | |||||| || | |||||| Sbjct 4457650 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGCAGCATTGGGACAATACC 4457709 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| ||| ||||| || | || ||||| | | |||||| Sbjct 4457710 ATTTGATGTCCCATTTGTGCCACGAATGTAACTGCCAGTGGCACGAATGTCATGAATAGA 4457769 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||||||||| ||| ||||| |||||| ||||| ||||||||||| Sbjct 4457770 AACACCAATTCCTCCTGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATAT 4457829 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||||||||||||| | ||||| ||||| || || ||| Sbjct 4457830 TCCCTCTATGCTATCATTTTTCATGCAGAGAAGGAAGCAACTA 4457872 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | || || ||||| |||||||||||| | | ||| | || || Sbjct 4458433 GTTCCTGCATTGAAAATAGTGGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 4458492 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| | ||| || || || || || |||||||| | || || | ||||||| Sbjct 4458493 TAAGTTTTGACAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGCAACCCTCATCAAC 4458552 Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || |||||||| | ||| || | ||| | | | ||||||| || || | |||| Sbjct 4458553 ATGTGCTGAGGCCTTTCCACAACCTTTCCT--TGAACCTTCAACAAATAGGACCTCTCCA 4458610 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || |||||||| || Sbjct 4458611 AGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 4458659 >seq3 Length=29476785 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | ||| | || | || ||| |||| || ||| Sbjct 2832867 TCCTCCTTGATCAACATACCGGGCAGTATCATTGAACACACGCAACATTGGAACAACACC 2832926 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||| ||| |||||||||||| | || || || || || ||| Sbjct 2832927 ATTGGAAGTCCCATTTGTACCACGAATATAACTTCCAGTGGCACGTATGTTGTGAACAGA 2832986 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 2832987 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCATATAT 2833046 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||||| ||||||||| ||||| | ||| || || ||| Sbjct 2833047 CCCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 2833089 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | || |||||||| || ||||||||| ||| || | || | | Sbjct 2833264 GTTCCGGCATTGAAAAGAGTTGGAGATGCATGGGTGAACCATCTTTGGGACATCATGTGG 2833323 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| | | | || ||||| || || |||||||| | ||||| | ||||||| Sbjct 2833324 TAAGTTTTGACAACAGAATCTATGTCATCCTTGTGAATTCCAACAGCGACCCTCATCAAC 2833383 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | ||| || || ||| | ||||| ||||| || | || || Sbjct 2833384 ATGTGCTGAGGCCTTTCCACAACCTTTCCATTAACCTTCAAGAGGTACGACCTCTCAAGG 2833443 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| ||||||||||| | || |||||| || || || || || Sbjct 2833444 GTTTTGAACCCAAAATAATCATAGTCAAAGTCCCTGTCATAGATTAT 2833490 >seq2 Length=36921656 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || || ||||| || | ||| | |||||| || || ||||| Sbjct 1442774 GCAGGCGAAGTCGCAGTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAG 1442715 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 |||||||| | || ||||| |||||||| || |||| |||| ||| |||||| |||| Sbjct 1442714 GCCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATGG-AGCAGAAGCTTCCAGAGAAGA 1442656 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 1442655 AGATTCCCTCGAC 1442643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686595088751040