Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq11 125 6e-24 seq706 86.0 5e-12 >seq11 Length=48970052 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || ||||| ||||| ||| | | | | | |||| ||| Sbjct 43329154 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTCCTCG 43329095 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || |||| || | |||||||||||| || | |||||| ||||| | Sbjct 43329094 AGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGGATACCCTCCTTATCCTGG 43329035 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||||| | |||| ||||||| | ||| || || || || || | || Sbjct 43329034 ATCTTGGCTTTCACATTGTCTATGGTGTCTGAGCTTTCCACCTCGAGGGTGATGGTCTTA 43328975 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||||||||||||||| ||||| Sbjct 43328974 CCGGTCAAAGTTTTCACAAAGATCTGCAT 43328946 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || ||||| ||||| ||| | | | | | |||| ||| Sbjct 43336715 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGGGTTCTCCCGTCCTCG 43336656 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || |||| || | |||||||||||| || | ||||||||| || | Sbjct 43336655 AGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGAGGGATACCCTCTTTGTCCTGG 43336596 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||||| | || | ||||||| | ||| || || || || || | || Sbjct 43336595 ATCTTGGCTTTCACATTGTCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTA 43336536 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||||||||||||||| ||||| Sbjct 43336535 CCGGTCAAAGTTTTCACAAAGATCTGCAT 43336507 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | |||||| |||||||||| || || || || || ||||||||||| Sbjct 43329856 CCACCACGAAGCCGCAACACCAAATGTAGAGTGGATTCCTTCTGGATATTGTAGTCAGCA 43329797 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| | ||||| ||||| || || || | || || | ||| |||||||| || Sbjct 43329796 AGGGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGA 43329737 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||| |||| | |||| |||||| | |||||| Sbjct 43329736 ATACCTTCCTTATCCTGAATCTTAGCCTTCACATTATCTATAGTGTCAGAACTTTCAACC 43329677 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | || ||||||||||| |||||||| |||||||| Sbjct 43329676 TCCAAAGTAATGGTCTTTCCCGTCAGAGTCTTCACAAATATTTGCAT 43329630 >seq706 Length=122390 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || | || || || ||||| || ||||| ||| Sbjct 23019 CCACCGCGGAGACGGAGCACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCGGCA 23078 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| | || || ||||| || || || ||||||||||||| || || || || Sbjct 23079 AGGGTTCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCTGGTGGG 23138 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| |||| | | |||| || || | || ||| Sbjct 23139 ATCCCTTCCTTGTCTTGAATCTTGGCCTTCACGTTATCTATGGTATCGGAACTCTCCACT 23198 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || ||||| || || |||||||||||||| Sbjct 23199 TCGAGAGTGATGGTCTTACCAGTCAGGGTCTTAACAAAGATTTGCAT 23245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424745184148032