Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq7 107 2e-18 seq2 96.9 4e-15 seq5 93.3 5e-14 seq59 91.5 2e-13 >seq3 Length=29476785 Score = 118 bits (130), Expect = 1e-21 Identities = 164/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || ||||| || |||||||| || ||||| | ||| || ||||| | |||| Sbjct 2833252 TGAGGCCTAGGTGTTCCGGCATTGAAAAGAGTTGGAGATGCATGGGTGAACCATCTTTGG 2833311 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| ||| || | | |||||||| ||||| ||| ||| || || | ||| Sbjct 2833312 GACATCATGTGGTAAGTTTTGACAACAGAATCTATGTCATCCTTGTGAATTCCAACAGCG 2833371 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| ||||||| ||| || |||||| | | |||| | | || |||| | Sbjct 2833372 ACCCTCATCAACATGTGCTGAGGCCTTTCCACAACCTTTCCATTAACC--TTCAAGAGGT 2833429 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | ||||||||||||||| ||||| ||| || | ||| |||||| Sbjct 2833430 ACGACCTCTCAAGGGTTTTGAACCCAAAATAATCATAGTCAAAGTCCC 2833477 >seq7 Length=19579009 Score = 107 bits (118), Expect = 2e-18 Identities = 266/401 (66%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 |||||||| ||||| || | || ||||| | | ||| |||||||| || ||||| Sbjct 15235303 TTAGTGGCAGCAATGACTATAACCCCAGTGTTTTCAGTAAAACCATCCATTTCAGTGAGC 15235244 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG-CATACCACCAGCACTGCGTTG 11619 || ||||| | |||||| || || ||||||||| || | || ||| | || | || Sbjct 15235243 AACTGATTCAGTGTTTGCTCCCTTTCATCATTTCCTCCACCTAT-ACCTGTACCTCTCTG 15235185 Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 | | || || ||||| |||||||||||||| | | ||| ||| |||| ||| | Sbjct 15235184 CCTCCCTACAGCATCTATCTCATCAATGAATATCAAACAAGGTGAGTTTTGTTTGGCCTT 15235125 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | ||| | ||| | |||||| ||| || ||||| ||||||||||| | || | || Sbjct 15235124 GTTAAACAAATCCCTCACCCTTGAGGCCCCTACACCCACAAACATCTCAATGAACTCTGA 15235065 Query 11740 GGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 |||| || ||| || || | || || || || || ||| || | || Sbjct 15235064 TCCAGATAGAGAGAAGAAAGGAACGCCAGCCTCTCCAGCAATTGCCTTGGCCAGCAATGT 15235005 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCC 11859 |||||| || ||||| || | | ||| | ||| |||||| || || ||| | Sbjct 15235004 CTTTCCAGTCCCTGGTGGCCCTACCAAAAGAACCCCTTTGGGGATTTTTGCTCCAACAGC 15234945 Query 11860 AAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTT 11900 | || | |||| ||| ||| | || || |||||||||| Sbjct 15234944 AGAAAACTTCTCTGGTGTCTTCAAGAACTCAACAATCTCTT 15234904 Score = 95.1 bits (104), Expect = 2e-14 Identities = 248/376 (66%), Gaps = 12/376 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| ||||| | || ||||| || ||||| ||||||||||| | Sbjct 16528151 AAACCCATCCATCTCCGTGAGAAGCTGGTTAATAGTCTGTTCCCTCTCATCATT--CCCA 16528094 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | ||| | || || || ||||||||||||||||||||||| Sbjct 16528093 CCTCCGAGGCCCGCCCCTCTCTGCCTCCCAACGGCGTCAATCTCATCAATGAAGACAATG 16528034 Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || ||| | ||| || | || || | ||| | ||||| |||||||| Sbjct 16528033 CACGGTGCCTTGTTCTTC----GCCTTCTCGAACAAATCCCTCACCCTCGAAGCACCCAC 16527978 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 || || |||| |||||| || | | || | |||| || || || || | || Sbjct 16527977 CCCCACGAACAGCTCCACGAACTCCGACGCCGCGCACGAGAAAAACGGCACTCCGGCCTC 16527918 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGC 11832 ||||| | || | || || || ||||| ||||| || ||| ||| | ||||| Sbjct 16527917 CCCCGCCACCGCCCTCGCCAGCAGCGTCTTCCCCGTCCCCGGCGGCCCCACCAGAAGACA 16527858 Query 11833 GCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 || || ||||| || || || || | ||||| | ||| | |||||| || Sbjct 16527857 CCCCTTCGGAATCTTTGCGCCCAAGGCAGTGTACTTATCGGGATTCTTCAAAAAATCAAC 16527798 Query 11893 AATCTCTTCAAGTTCA 11908 || ||||| || ||| Sbjct 16527797 AACCTCTTGGAGCTCA 16527782 >seq2 Length=36921656 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || |||||||| ||||| || ||||| || || ||||| | || Sbjct 1442759 GTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGGCCAGGCATCAAGCC 1442700 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| |||| | |||||| || ||||||||||| ||||| || || Sbjct 1442699 GCGCTTCTTGAGCCAGAAAATGGAGCAGAAGCTTCCAGAGAAGAAGATTCCCTCGACGCA 1442640 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | | ||| || ||||||||| || | || | ||| || || Sbjct 1442639 GGCGAAGGCGACGATGCGCTCAGCGAAGGAGTCGGA---GGAGTCGATCCAGCGCAGGGC 1442583 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||||| |||||||| ||| || || | |||| |||||| Sbjct 1442582 CCATTGGGCCTTCTTGGCAACGCAGGGGATGGTTTCGATGGC 1442541 >seq5 Length=5133333 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || || ||||| || |||||||| | || |||| ||| ||| ||||| | || Sbjct 4458420 CTGAGGCCTAGGTGTTCCTGCATTGAAAATAGTGGGTGATGCATGAGTGAACCATCTCTG 4458479 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | || || | | ||||||||||||| ||| ||| || || | || Sbjct 4458480 AGACATCAAATGATAAGTTTTGACAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGC 4458539 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||||| ||| || |||||| | | || | || || | | | || Sbjct 4458540 AACCCTCATCAACATGTGCTGAGGCCTTTCCACAACCTTTCC-TTGAACCTTCAACAAAT 4458598 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || | |||| | |||||||| |||||||||| || | ||| |||||| Sbjct 4458599 AGGACCTCTCCAAGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCC 4458646 >seq59 Length=585201 Score = 91.5 bits (100), Expect = 2e-13 Identities = 238/363 (66%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| || || || | | ||||| |||||| || || | | || || || || Sbjct 286596 ATCAAACCGGCCTGGTCTCAATAGGGCAGAATCAAGAATGTCAGCCCTGTTGGTTGCTGC 286655 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | | ||||| |||||||| || || | | ||| || | Sbjct 286656 AATGACAATGATACCAGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 286715 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGC 11631 || |||||||| |||||||| | | ||||| | | ||| | || || || Sbjct 286716 GGTCTGTTCTCTTTCATCATTCCCACCACCAATACCAGTCCCTCTTTGTCTTCCAACAGC 286775 Query 11632 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 11691 |||||| ||||||| |||||||| || || ||| || ||| | | || | ||| Sbjct 286776 ATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGCCTTCTTGAACAAATC 286835 Query 11692 GCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG 11751 || || | ||||| ||||||||||||||||| ||||| | | | || | Sbjct 286836 ACGGACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTGATATCGA 286895 Query 11752 GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACC 11811 || ||||| ||| | |||||| || || || || | |||||||| || || || Sbjct 286896 GAAAAATGGAACACCAGCTTCACCAGCAATAGCCTTAGCTAAAAGGGTCTTCCCAGTTCC 286955 Query 11812 TGG 11814 ||| Sbjct 286956 TGG 286958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627745177785600