Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 seq6 111 2e-19 seq59 104 3e-17 seq8 87.8 2e-12 seq3 87.8 2e-12 >seq2 Length=36921656 Score = 141 bits (156), Expect = 1e-28 Identities = 379/570 (66%), Gaps = 21/570 (4%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| ||||| || |||||||| ||||| || |||||||| | ||| || |||||| Sbjct 1443059 ATACTCCCCCACGCGCTTCTCAAAGAAATTGGTCTTCCCCTGCAACGAAATCAGCTCCAT 1443000 Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841 | ||||| ||||||| ||| | || || | | || |||| | | Sbjct 1442999 CCAGTCAAAAGGGTTCTGAACATTG---TACACCTTCCCG-CAG-CCAAGCGCAACCAAC 1442945 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 | |||||||| || |||||||||||| | |||| ||| ||||| || | | Sbjct 1442944 AAACGATCCGCCACAAACTCAATGTACTGACCCATCAACTCCCCATTCATCCCCAGCAAC 1442885 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 || || |||||||| | | ||| || |||| || |||||||| |||| |||||| Sbjct 1442884 GCGCACGGAAGCGCGTCGCACACAAACTCCCTCTCGATATCCACAGCGTCCCTCACGATC 1442825 Query 129962 GCGTGAATGGTCTCCGTGCCAGGTCTATTGC---GCAAAGTCTTGAAGAGTTCCACGGCA 130018 | | | | |||| || | | || | ||| || | ||||| || ||| Sbjct 1442824 TCCTTCACGCGCTCCTCGCTGAGCTTCTTCCTCAGCAGAGAGTACAAGAGG--CA-GGCG 1442768 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||| || |||||||| ||||| |||||||| || ||||| || || ||| Sbjct 1442767 AAGTCGCAGTGAAGCCCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGGCCAGGC 1442708 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 || | || |||||||| | ||||||||| | || || |||||||||||||| ||| Sbjct 1442707 ATCAAGCCGCGCTTCTTGAGCCAGAAAATGGAGCAGAAGCTTCCAGAGAAGAAGATTCCC 1442648 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198 || || || ||||| || | || |||||||| |||||| ||| | || | ||| Sbjct 1442647 TCGACGCAGGCGAAGGCGACGATGCGCTCAGCGAAGGAGTCGGA---GGAGTCGATCCAG 1442591 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 || ||||| || ||||| || | | || |||| ||| | ||| || | ||||| Sbjct 1442590 CGCAGGGCCCATTGGGCCTTCTTGGCAACGCAGGGGATGGTTTCGATGGCGTGGAAGAGG 1442531 Query 130259 TCCTTCTTTTCTGATGGATCT-TTGATGTA 130287 | | ||| || | ||| || |||||||| Sbjct 1442530 TGGTGCTTCTC-GTCGGAGCTCTTGATGTA 1442502 >seq6 Length=23791330 Score = 111 bits (122), Expect = 2e-19 Identities = 197/285 (69%), Gaps = 12/285 (4%) Strand=Plus/Plus Query 11925 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTCA 11984 || ||||| ||| |||| || ||||| |||||| ||| || ||||||||||||||||| Sbjct 18589937 AACTACCGGGAAGCCTACGGCCTCTTCGCGTGCAATGGGATCCTCTTCAACCACGAGTCT 18589996 Query 11985 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA------CCGATGGTATCAAACAA 12038 |||||||| ||| | |||||||||| |||||||| ||| || || | Sbjct 18589997 CCCCGTCGCGGCGAGAATTTCGTGACTCGGAAGATCACGCGGGCCGTGGGCCGCATCAAG 18590056 Query 12039 ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 12098 |||| ||| | || || | || ||||||||||| | ||| ||||| ||| Sbjct 18590057 ATCG-GGC--TCCAAAGCAAGCTGTTT---TTGGGGAACCTTCAGGCCTCTAGGGATTGG 18590110 Query 12099 GGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 12158 || || ||||||||| || ||||||||||| | || || || || || | || Sbjct 18590111 GGCTTCGCTGGGGACTATGTGGAGGCCATGTGGCTGATGCTGCAGCAGGAGAAGCCTGAT 18590170 Query 12159 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 12203 || ||||| || || || | ||| | ||| |||| ||||||| Sbjct 18590171 GACTATGTTGTGGCCACTGAAGAGTCCCACACCGTGGAGGAGTTC 18590215 >seq59 Length=585201 Score = 104 bits (114), Expect = 3e-17 Identities = 249/369 (67%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | ||||| ||||| || ||| | ||| || || || Sbjct 286596 ATCAAACCGGCCTGGTCTCAATAGGGCAGAATCAAGAATGTCAGCCCTGTTGGTTGCTGC 286655 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 ||||||| ||| || || | ||||| |||||||| || ||||| ||||| |||| Sbjct 286656 AATGACAATGATACCAGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 286715 Query 14185 GGTTTGTTCGCGTTCATCATTCGCAGGC---ATACCACCCGCACTGCGTTGCTTACCGAC 14241 ||| ||||| | |||||||||| || |||||| | | || || ||| || || Sbjct 286716 GGTCTGTTCTCTTTCATCATTCCCACCACCAATACCAGTCCCTCTTTGT--CTT-CCAAC 286772 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA--AAG 14299 || ||||||||||| | || || || || || ||| || ||| |||| || Sbjct 286773 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTGAAC 286830 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 | ||| || |||| ||||| ||||| ||||||||||| ||||| | | | | | Sbjct 286831 AAATCACGGACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTG-A 286889 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 || | || || || || || |||||| || || || || | ||||||||||| Sbjct 286890 TATCGAGAAAAATGGAACACCAGCTTCACCAGCAATAGCCTTAGCTAAAAGGGTCTTCCC 286949 Query 14419 CGTCCCTGG 14427 || ||||| Sbjct 286950 AGTTCCTGG 286958 >seq8 Length=20383548 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/256 (68%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| || ||| | ||| || || || | ||||| ||| || || | ||||| Sbjct 11725105 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAACGACAATGATACCGGTATTACCCTCAAAT 11725046 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | Sbjct 11725045 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 11724989 Query 14216 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 ||| || | || | |||| | || || || ||||||||||| | |||| || || Sbjct 11724988 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAAAATAATGCAC 11724929 Query 14273 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| || ||| |||| || | ||| || |||| ||||| | ||| | Sbjct 11724928 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGGACTCGAGAAGCACCAATACCAA 11724871 Query 14331 CAAACATCTCCACAAA 14346 |||||||||| ||||| Sbjct 11724870 CAAACATCTCAACAAA 11724855 >seq3 Length=29476785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 6/130 (5%) Strand=Plus/Plus Query 180848 CGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 180907 ||||| |||||||| || ||||||| || | |||||| ||||| || |||||||| | Sbjct 23255925 CGATGACAAACTCCGTTGAGAAGATGTTTGTGAGCTTGGCGCCGTAACCGTTGCGTCCGC 23255984 Query 180908 CAACAATTCTCTTCTTG---TTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAAGG 180964 | | |||||||| ||||| |||||||| |||| ||||||||||| || ||| Sbjct 23255985 CGG---TGGTCTTCTTGACGTTGTCGTCGTAGTTGCTACTGGTGAGGAGGTGTCCGAAGA 23256041 Query 180965 TAAGTTCTGG 180974 | ||||| || Sbjct 23256042 TGAGTTCGGG 23256051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618152760644160