Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq59 129 7e-25 seq8 127 2e-24 seq2 122 1e-22 seq3 107 2e-18 seq7 102 1e-16 >seq59 Length=585201 Score = 129 bits (142), Expect = 7e-25 Identities = 251/366 (69%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | | || || |||||| || ||| | | || || || || Sbjct 286596 ATCAAACCGGCCTGGTCTCAATAGGGCAGAATCAAGAATGTCAGCCCTGTTGGTTGCTGC 286655 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 ||||||| ||||| || | | ||||| |||||||| ||||||||||||||||| | Sbjct 286656 AATGACAATGATACCAGTATTACCCTCAAACCCATCCATTTCTGTCAAAAGTTGGTTGAG 286715 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9705 || ||||| | |||||||||| | | ||||| | | ||| |||| || || Sbjct 286716 GGTCTGTTCTCTTTCATCATTCCCACCACCAATACCAGTCCCTCTTTGTCTTCCAACAGC 286775 Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGA 9763 |||||| ||||||| ||||| ||||| || ||| || || |||| || | | Sbjct 286776 ATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTGAACAAA 286833 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || || || || ||||||||||||||||| ||||| | | | | | || Sbjct 286834 TCACGGACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTG-ATAT 286892 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | || || || ||| || |||||| ||||| || || | ||| ||||| || || Sbjct 286893 CGAGAAAAATGGAACACCAGCTTCACCAGCAATAGCCTTAGCTAAAAGGGTCTTCCCAGT 286952 Query 9883 ACCTGG 9888 ||||| Sbjct 286953 TCCTGG 286958 >seq8 Length=20383548 Score = 127 bits (140), Expect = 2e-24 Identities = 282/417 (68%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || ||| | | || || || || | ||||| ||||| || | | ||||| Sbjct 11725106 ATCAAGAATGTCAGCCCTGTTAGTAGCTGCAACGACAATGATACCGGTATTACCCTCAAA 11725047 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||| ||||||||||||||||| | || ||||| | |||||||||| || Sbjct 11725046 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT---CC 11724990 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| || | |||| |||| || |||||||| ||||| | || | ||||| Sbjct 11724989 ACCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAAAATAATGCA 11724930 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || ||| || || |||| || | ||| || || || || || | |||| Sbjct 11724929 CGGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGGACTCGAGAAGCACCAATACCA 11724872 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| ||||| | | | | | |||| || || |||||| | |||||| Sbjct 11724871 ACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAACGGGACACCTGCTTCACC 11724813 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || || | ||| ||||| || || || || ||| | || || |||| Sbjct 11724812 TGCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACC 11724753 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | ||| || || ||| || ||| |||||||| | ||| ||||| ||||| Sbjct 11724752 TTTTGGTATACGTGCCCCAACAGCAGTGTACCTCTCAGGCTTCTTTAGAAACTCCAC 11724696 >seq2 Length=36921656 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| |||||||| || |||| || || || || ||||| |||||||||||||| | Sbjct 1442610 TCCTTCGCTGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCTGGAAGC 1442669 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| | |||| |||||||||||||| || | ||||| || ||| ||||||||| Sbjct 1442670 TTCTGCTCCATTTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGCCTCACTTTCTCCAAC 1442729 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || || || || |||||||| || ||| Sbjct 1442730 GAACTCATTTCCCGCGACGAGGGGCTTCAC 1442759 >seq3 Length=29476785 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 104195 || |||| |||| || ||||||||| ||||||||||||||| | || |||| || Sbjct 2833478 AGGGACTTTGACTATGATTATTTTGGGTTCAAAACCCTTGAGAGGTCGTACCTCTTGAA- 2833420 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 | | |||| | |||||| || ||| ||||||| ||| | || || | || | Sbjct 2833419 -GGTTAATGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTCGCTGTTGGAA 2833361 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315 |||| ||| ||||| |||||||| | | || ||| ||| |||||||||| | || Sbjct 2833360 TTCACAAGGATGACATAGATTCTGTTGTCAAAACTTACCACATGATGTCCCAAAGATGGT 2833301 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || ||| | ||||| || |||||||| || ||||| || || ||| Sbjct 2833300 TCACCCATGCATCTCCAACTCTTTTCAATGCCGGAACACCTAGGCCTCAA 2833251 >seq7 Length=19579009 Score = 102 bits (112), Expect = 1e-16 Identities = 247/369 (67%), Gaps = 14/369 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| || | ||| ||||||||||| ||||||| ||||||||| | Sbjct 16528151 AAACCCATCCATCTCCGTGAGAAGCTGGTTAATAGTCTGTTCCCTCTCATCATTCCC--A 16528094 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | ||| | || ||||| |||||||||||||||||||| ||| Sbjct 16528093 CCTCCGAGGCCCGCCCCTCTCTGCCTCCCAACGGCGTCAATCTCATCAATGAAGACAATG 16528034 Query 9731 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 || || ||| | ||||| | || || | ||||| || | | || ||||| Sbjct 16528033 CACGGTGCCTTGTTCTTCGCCTTC----TCGAACAAATCCCTCACCCTCGAAGCACCCAC 16527978 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 || || |||| |||||| || | | || | || || || || || | || Sbjct 16527977 CCCCACGAACAGCTCCACGAACTCCGACGCCGCGCACGAGAAAAACGGCACTCCGGCCTC 16527918 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||||| | || | || || || ||||| ||||| || ||| ||| | | || | | Sbjct 16527917 CCCCGCCACCGCCCTCGCCAGCAGCGTCTTCCCCGTCCCCGGCGGCCCCACCA-GAAGAC 16527859 Query 9907 ACCTCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||| | | |||||||| ||||| || ||| | || || | ||| | |||||| | Sbjct 16527858 ACCCCTTCGGAATCTTTGCGCCCAAGGCAGTGTACTTATCGGGATTCTTCAAAAAATCAA 16527799 Query 9966 CAATTTCTT 9974 ||| |||| Sbjct 16527798 CAACCTCTT 16527790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582994424792640