Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq3 89.7 6e-13 seq95 86.0 7e-12 seq133 84.2 2e-11 seq11 82.4 8e-11 seq1 82.4 8e-11 >seq2 Length=36921656 Score = 176 bits (194), Expect = 5e-39 Identities = 550/825 (67%), Gaps = 40/825 (5%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || || ||||| ||||| || ||||||||||| | |||||| || |||||| Sbjct 1443059 ATACTCCCCCACGCGCTTCTCAAAGAAATTGGTCTTCCCCTGCAACGAAATCAGCTCCAT 1443000 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC---CAAACTGTGCCATGAG 74578 |||||| |||||||||| || ||| | |||| | | ||| | ||| | Sbjct 1442999 CCAGTCAAAAGGGTTCTGAACATTGTACAC---CTTCCCGCAGCCAAGCGCAACCAACAA 1442943 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTT-CTCCCGCATCCATGCCGATGAGTT 74637 |||||||||||||| | ||||||||| ||| ||||| ||| ||| || | | Sbjct 1442942 ACGATCCGCCACAAACTCAATGTACTGACCCATCAACTCCC-CATTCATCCCCAGCAACG 1442884 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGC--CCATTGGACAAT 74695 |||||| || || ||| | |||||| ||||| | || ||| || | || || Sbjct 1442883 CGCACGGAAGCGCGTCGCACACAAACTCCCTCTCGATATCCACAGCGTCCCTC--ACGAT 1442826 Query 74696 CTTGTGAATGTCTT--TGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACGGC 74752 || | | | | | | | || || | |||||| ||||||| ||| | || ||| Sbjct 1442825 CTCCTTCACGCGCTCCTCGCTGAGC--TTCTTCCTCAGCAGAGAGTACAAGAGGCA-GGC 1442769 Query 74753 AAACTCC---TGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 || || ||| || || || || | | || | ||| || || || | ||||| Sbjct 1442768 GAAGTCGCAGTGAAGC---CCCTCGTCGCGGGAAATGAGTTCGTTGGAGAAAGTGAGGCC 1442712 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 |||||| | || |||||||| | ||| || |||| |||||| ||| ||||||||| Sbjct 1442711 AGGCATCAAGCCGCGCTTCTTGAGCCAGAAAATGGAGCAGAAGCTTCCAGAGAAGAAGAT 1442652 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGA--AGTC-AT 74926 || ||||| || || |||||||| | ||| | ||||| || | ||||| |||| || Sbjct 1442651 TCCCTCGACGCAGGCGAAGGCGACGATGCGCTCAGCGAA-GGAG--TCGGAGGAGTCGAT 1442595 Query 74927 CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGA 74985 ||| | | ||||||| || ||| | | |||| |||| || ||||| || |||| Sbjct 1442594 CCAGCGCAGGGCCCATTGGGC-CTTCTTGGCAACGCAGGGGATGGTTTCGATGGCGTGGA 1442536 Query 74986 AGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTC 75044 ||||| |||||| |||| ||||| | || || || | | || |||| || Sbjct 1442535 AGAGGTGGTGCTTCTCGTCGGAGCTCTTGATGTAGGTT-TCGAGGAGGAGGCTGTACATC 1442477 Query 75045 TCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 || || || || |||| || ||| ||| | ||||||| | || ||||| || | Sbjct 1442476 TCGGAGTGGATGTTCTCGATG-GCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGAC 1442418 Query 75104 CTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 || | ||||| |||| | | ||| |||||| | |||||||||||| |||||| Sbjct 1442417 TTGGATCTCCTTCATGAAGCGGCC--GGCGAGATTCTCGAGGACGATGCCGTCGGAGGCG 1442360 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || || || || ||| |||||||| || |||| ||||| |||||| Sbjct 1442359 GCAAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCCCAG 1442300 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 | |||||| || | || | |||||| ||||||||||| Sbjct 1442299 TGGCGGAGGTCCTGCGAGAGGTCGACCTCCTCCGCCGTCCAGAAA 1442255 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || ||| ||||||||||||||||||||||||||| ||||| Sbjct 25336187 TGCTTTCGTTGAGAGTCGAAGTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 25336246 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 25336247 TGAGCTACGAAAGC 25336260 >seq3 Length=29476785 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 22216690 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 22216631 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 22216630 TGAGCTACGAAAGC 22216617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 12548896 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 12548837 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 12548836 CTGAGCTATGAAAGCA 12548821 >seq95 Length=489135 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 ||||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 243616 GACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 243557 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 243556 AACTGAGCTACGAGAGC 243540 >seq133 Length=426965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 48162 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 48103 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 48102 TGAGCTACGAGAGCAA 48087 >seq11 Length=48970052 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 44934144 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 44934203 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 44934204 CTGAGCTACGAGAGC 44934218 >seq1 Length=17676265 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 11871817 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 11871876 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 11871877 TGAGCTATGAAAGCA 11871891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546966086452800