Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq848 87.8 1e-12 >seq11 Length=48970052 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||| | || ||||| ||||| | || || |||||| | Sbjct 43329858 ATGCAAATATTTGTGAAAACTTTAACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 43329917 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||| | || || ||| || ||||| ||||| |||| ||| | Sbjct 43329918 GATACTATTGACAGT--GTGAAGGCAAAGATTCAGGACAAGGAAGGCATTCCCCCGGACC 43329975 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| || || |||||||| || | || | |||| | ||||||| Sbjct 43329976 AGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCTGATTACA 43330035 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | || || |||||| ||| || ||| | ||| | ||| | ||||| ||| Sbjct 43330036 ATATTCAGAAAGAGTCCACCTTACATCTTGTTCTTCGTCTTCGTGGTGGC 43330085 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||| || ||||| ||||| | || || |||||| | Sbjct 43337419 ATGCAAATATTTGTGAAAACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 43337478 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || ||| ||| || ||||| || || |||| || | Sbjct 43337479 GATACTATTGACAAT--GTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATC 43337536 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| || || |||||||| || | || | |||| | || || | Sbjct 43337537 AGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCGGACTATA 43337596 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || || || |||||| ||| | || | || | ||||| || Sbjct 43337597 ATATTCAGAAGGAATCCACTTTACATCTTGTGCTTCGCCTTCGTGGTGG 43337645 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || | || ||||| || |||||| | || Sbjct 43329495 GACAAGGAGGGTATTCCACCAGACCAGCAGAGGCTTATCTTTGCTGGTAAACAACTCGAA 43329554 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | | | | | | | |||||||||||||| |||||| |||| |||||||||||||| Sbjct 43329555 GATGGAAGAACCCTTGCGGATTACAACATCCAGAAAGAGTCCACTCTGCATTTGGTTTTG 43329614 Query 28003 CGTTTGCGTGGCGGC 28017 | | ||||| ||| Sbjct 43329615 AGGCTTCGTGGTGGC 43329629 >seq848 Length=99386 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||| | ||||| || |||||| | || || ||||| | Sbjct 64068 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACCTTGGAGGTTGAAAGTTCA 64127 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| |||||| ||||| || || |||| || | Sbjct 64128 GACACTATTGACAAT--GTCAAAGCAAAAATCCAAGACAAGGAGGGAATTCCACCAGACC 64185 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | ||| |||| || ||||| || || |||||||| || | | | | |||| | |||||| Sbjct 64186 AACAAAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTG-CTGATTAC 64244 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || |||||| ||| | || | || |||||| | ||||| || Sbjct 64245 AACATTCAGAAAGAGTCTACTCTTCACCTTGTCTTGCGTCTTCGTGGTGG 64294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355703940700872