Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cajanus_20cajan_20[refseq_20GCF_5F000340665.1_202016-09-29] 36,536 sequences; 592,970,700 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 122 7e-23 seq706 111 1e-19 seq848 102 7e-17 seq6 89.7 4e-13 seq8 87.8 2e-12 >seq11 Length=48970052 Score = 122 bits (134), Expect = 7e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || ||| ||| || || || |||||||| ||||| |||| | | Sbjct 43336949 CGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTATAATCCGCAAGGGTTCTTCCA 43336890 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || ||||||||||| || ||||| ||||| | ||||||||| |||||| | | ||| || Sbjct 43336889 TCTTCAAGCTGTTTTCCAGCAAAGATAAGTCTCTGCTGGTCTGGTGGG-ATACCCTCCTT 43336831 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| || || ||| | | | | ||||| |||||| |||| ||||| Sbjct 43336830 GTCCTGAATCTTGGCTTTTACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTGAT 43336771 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||||||||||| ||||| || || |||||||| Sbjct 43336770 AGTTTTTCCCGTCAAAGTTTTGACGAAAATTTGCAT 43336735 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || ||| ||| || || || || ||||| ||||| || || | Sbjct 43337177 CGCAACACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGCCCA 43337118 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||||||||| || ||||| ||||| | ||||||||| | || | | ||| ||| Sbjct 43337117 TCCTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCCTTG 43337058 Query 39190 TC 39191 || Sbjct 43337057 TC 43337056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| |||||||||||||| ||| || || || ||||| ||||| ||||| || || | Sbjct 43337406 GCGCAACACCAAATGTAGAGTGGATTCCTTCTGGATATTGTAATCAGCAAGGGTACGCCC 43337347 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| || || ||||| ||||| | ||||||||| | || | || ||| || Sbjct 43337346 ATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTT 43337287 Query 39189 GTCC 39192 ||| Sbjct 43337286 ATCC 43337283 >seq706 Length=122390 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| || ||||| || || ||||||||||| ||||| | || || Sbjct 23036 CACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTTCGCCCATCCTC 23095 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||| ||||| ||||| || |||||||||||||| |||||| | || || ||||| Sbjct 23096 AAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCTGGTGGGATCCCT-TCCTTGTCTT 23154 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || || || | | | | |||||| |||||| || | ||||| | | Sbjct 23155 GAATCTTGGCCTTCACGTTATCTATGGTATCGGAACTCTCCACTTCGAGAGTGATGGTCT 23214 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || ||||| || ||||||||||||||||||| Sbjct 23215 TACCAGTCAGGGTCTTAACAAAGATTTGCATCT 23247 >seq848 Length=99386 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || |||||| ||| ||||| || || |||||||| || || || | || || Sbjct 56520 CACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGGCGAGGGTACGGCCATCCTC 56461 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| ||||| || ||||| |||||||||| || | || || ||||| | Sbjct 56460 AAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT-T 56402 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| | | | | | | | | ||||| ||| || || | ||||| ||| Sbjct 56401 GAATTTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCTACTTCGAGAGTGATGGTTT 56342 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || || ||||| ||||||||||||| Sbjct 56341 TACCGGTGAGGGTCTTAACGAAGATTTGCATCT 56309 >seq6 Length=23791330 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 10734058 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 10733999 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||| | || | || ||| |||||| ||| || Sbjct 10733998 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 10733939 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || |||||||| |||| || || |||| ||||| Sbjct 10733938 GCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTTATCGTTTTACCCGT 10733880 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 || ||||| || ||||| |||||| | ||| Sbjct 10733879 TAGGGTTTTCACGAAGATCTGCATCGTCACG 10733849 >seq8 Length=20383548 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 13445043 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 13445102 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || ||||| || ||||||||||||| || | | ||| |||||| ||| || Sbjct 13445103 TTTCCGGCGAATATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTG 13445162 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || |||||||| |||| || || |||| ||||| Sbjct 13445163 GCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTTATCGTTTTACCCGT 13445221 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 || ||||| || || || |||||| Sbjct 13445222 TAGGGTTTTCACGAAAATCTGCATC 13445246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429354330861368